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The wavelet tree (Grossi et al. [SODA, 2003]) and wavelet matrix (Claude et al. [Inf. Syst., 47:15--32, 2015]) are compact indices for texts over an alphabet $[0,\sigma)$ that support rank, select and access queries in $O(\lg \sigma)$ time.…

Data Structures and Algorithms · Computer Science 2017-11-13 Johannes Fischer , Florian Kurpicz , Marvin Löbel

In this paper we introduce Jiffy, the first lock-free, linearizable ordered key-value index that offers both (1) batch updates, which are put and remove operations that are executed atomically, and (2) consistent snapshots used by, e.g.,…

Data Structures and Algorithms · Computer Science 2021-02-02 Tadeusz Kobus , Maciej Kokociński , Paweł T. Wojciechowski

Efficiently querying data on embedded sensor and IoT devices is challenging given the very limited memory and CPU resources. With the increasing volumes of collected data, it is critical to process, filter, and manipulate data on the edge…

Databases · Computer Science 2023-03-07 David Ding , Ivan Carvalho , Ramon Lawrence

This paper describes a new approach, called Terminological Bucket Indexing (TBI), for efficient indexing and retrieval of both nested and super terms using a single method. We propose a hybrid data structure for facilitating faster indexing…

Data Structures and Algorithms · Computer Science 2019-05-24 Md Faisal Mahbub Chowdhury , Robert Farrell

Index plays an essential role in modern database engines to accelerate the query processing. The new paradigm of "learned index" has significantly changed the way of designing index structures in DBMS. The key insight is that indexes could…

Databases · Computer Science 2021-04-14 Jiacheng Wu , Yong Zhang , Shimin Chen , Jin Wang , Yu Chen , Chunxiao Xing

We describe a new parallel implementation, mplrs, of the vertex enumeration code lrs that uses the MPI parallel environment and can be run on a network of computers. The implementation makes use of a C wrapper that essentially uses the…

Mathematical Software · Computer Science 2017-10-13 David Avis , Charles Jordan

Scheduling query execution plans is a particularly complex problem in shared-nothing parallel systems, where each site consists of a collection of local time-shared (e.g., CPU(s) or disk(s)) and space-shared (e.g., memory) resources and…

Databases · Computer Science 2014-04-01 Minos Garofalakis , Yannis Ioannidis

Asynchronous programming models (APM) are gaining more and more traction, allowing applications to expose the available concurrency to a runtime system tasked with coordinating the execution. While MPI has long provided support for…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-23 Joseph Schuchart , Christoph Niethammer , José Gracia

To maximize the performance of concurrent data structures, researchers have often turned to highly complex fine-grained techniques, resulting in efficient and elegant algorithms, which can however be often difficult to understand and prove…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-21 Trevor Brown , William Sigouin , Dan Alistarh

Database management systems (DBMSs) carefully optimize complex multi-join queries to avoid expensive disk I/O. As servers today feature tens or hundreds of gigabytes of RAM, a significant fraction of many analytic databases becomes…

Databases · Computer Science 2015-07-22 Feilong Liu , Spyros Blanas

We present a simple and easy to apply methodology for using high-level self-submitting parallel job queues in an MPI environment. Using C++, we implemented a library of functions, MPQueue, both for testing our concepts and for use in real…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-04-23 John M. Neuberger , Nandor Sieben , James W. Swift

In this paper we present two versions of a parallel working-set map on p processors that supports searches, insertions and deletions. In both versions, the total work of all operations when the map has size at least p is bounded by the…

Data Structures and Algorithms · Computer Science 2018-07-12 Kunal Agrawal , Seth Gilbert , Wei Quan Lim

We present four high performance hybrid sorting methods developed for various parallel platforms: shared memory multiprocessors, distributed multiprocessors, and clusters taking advantage of existence of both shared and distributed memory.…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-04 Thoria Alghamdi , Gita Alaghband

The need for scalable concurrent ordered set data structures with linearizable range query support is increasing due to the rise of multicore computers, data processing platforms and in-memory databases. This paper presents a new concurrent…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-05 Kjell Winblad

Multidimensional data are becoming more prevalent, partly due to the rise of the Internet of Things (IoT), and with that the need to ingest and analyze data streams at rates higher than before. Some industrial IoT applications require…

Databases · Computer Science 2017-07-05 Juan A. Colmenares , Reza Dorrigiv , Daniel G. Waddington

We present bundled references, a new building block to provide linearizable range query operations for highly concurrent lock-based linked data structures. Bundled references allow range queries to traverse a path through the data structure…

Data Structures and Algorithms · Computer Science 2022-06-30 Jacob Nelson-Slivon , Ahmed Hassan , Roberto Palmieri

Identifying interactions between proteins is important to understand underlying biological processes. Extracting a protein-protein interaction (PPI) from the raw text is often very difficult. Previous supervised learning methods have used…

Quantitative Methods · Quantitative Biology 2018-08-10 Mahtab Ahmed , Jumayel Islam , Muhammad Rifayat Samee , Robert E. Mercer

Bulk-bitwise processing-in-memory (PIM), an emerging computational paradigm utilizing memory arrays as computational units, has been shown to benefit database applications. This paper demonstrates how GROUP-BY and JOIN, database operations…

Hardware Architecture · Computer Science 2023-11-03 Ben Perach , Ronny Ronen , Shahar Kvatinsky

Dynamic tree data structures maintain a forest while supporting insertion and deletion of edges and a broad set of queries in $O(\log n)$ time per operation. Such data structures are at the core of many modern algorithms. Recent work has…

Data Structures and Algorithms · Computer Science 2025-06-23 Humza Ikram , Andrew Brady , Daniel Anderson , Guy Blelloch

Scanning and filtering over multi-dimensional tables are key operations in modern analytical database engines. To optimize the performance of these operations, databases often create clustered indexes over a single dimension or…

Databases · Computer Science 2020-06-25 Vikram Nathan , Jialin Ding , Mohammad Alizadeh , Tim Kraska