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Data visualization is the process by which data of any size or dimensionality is processed to produce an understandable set of data in a lower dimensionality, allowing it to be manipulated and understood more easily by people. The goal of…
This paper presents maplet, an open-source R package for the creation of highly customizable, fully reproducible statistical pipelines for omics data analysis, with a special focus on metabolomics-based methods. It builds on the…
Heatmap is a common geovisualization method that interpolates and visualizes a set of point observations on a map surface. Most of online web mapping libraries implement a one-pass heatmap algorithm using HTML5 canvas or WebGL for efficient…
Data preprocessing is a crucial stage in the data analysis pipeline, with both technical and social aspects to consider. Yet, the attention it receives is often lacking in research practice and dissemination. We present the Smallset…
Data discovery from data lakes is an essential application in modern data science. While many previous studies focused on improving the efficiency and effectiveness of data discovery, little attention has been paid to the usability of such…
The effective visualization of genomic data is crucial for exploring and interpreting complex relationships within and across genes and genomes. Despite advances in developing dedicated bioinformatics software, common visualization tools…
The linked micromaps approach was originally developed as an improvement to choropleth maps for displaying statistical summaries connected with spatial areal units, such as countries, states, and counties. Two R packages to create linked…
The rapid development of tools for acquisition and storage of information has lead to the formation of enormous medical databases. The large quantity of data definitely surpasses the abilities of humans for efficient usage without…
Post-hoc analysis is a popular category in eXplainable artificial intelligence (XAI) study. In particular, methods that generate heatmaps have been used to explain the deep neural network (DNN), a black-box model. Heatmaps can be appealing…
The synthpop package for R https://www.synthpop.org.uk provides tools to allow data custodians to create synthetic versions of confidential microdata that can be distributed with fewer restrictions than the original. The synthesis can be…
Heatmaps have been instrumental in helping understand deep network decisions, and are a common approach for Explainable AI (XAI). While significant progress has been made in enhancing the informativeness and accessibility of heatmaps,…
For decades, the growth and volume of digital data collection has made it challenging to digest large volumes of information and extract underlying structure. Coined 'Big Data', massive amounts of information has quite often been gathered…
Parcellations are fundamental tools in neuroanatomy, allowing researchers to place functional imaging and molecular data within a structural context in the brain. Visualizing these parcellations is critical to guide biological understanding…
Supervised hashing methods are widely-used for nearest neighbor search in computer vision applications. Most state-of-the-art supervised hashing approaches employ batch-learners. Unfortunately, batch-learning strategies can be inefficient…
The digital conversion of information stored in documents is a great source of knowledge. In contrast to the documents text, the conversion of the embedded documents graphics, such as charts and plots, has been much less explored. We…
Visualization, from simple line plots to complex high-dimensional visual analysis systems, has established itself throughout numerous domains to explore, analyze, and evaluate data. Applying such visualizations in the context of simulation…
Analyzing and working with big data could be very diffi cult using classical means like relational database management systems or desktop software packages for statistics and visualization. Instead, big data requires large clusters with…
The amount of data in the world is expanding rapidly. Every day, huge amounts of data are created by scientific experiments, companies, and end users' activities. These large data sets have been labeled as "Big Data", and their storage,…
The past decade has witnessed a dramatic increase in the size and scope of biological and behavioral experiments. These experiments are providing an unprecedented level of detail and depth of data. However, this increase in data presents…
Visualizing high-dimensional data has been a focus in data analysis communities for decades, which has led to the design of many algorithms, some of which are now considered references (such as t-SNE for example). In our era of overwhelming…