Related papers: Equivalence Classes of Staged Trees
An EPG-representation of a graph $G$ is a collection of paths in a plane square grid, each corresponding to a single vertex of $G$, so that two vertices are adjacent if and only if their corresponding paths share infinitely many points. In…
Given a graph E we define E-algebraic branching systems, show their existence and how they induce representations of the associated Leavitt path algebra. We also give sufficient conditions to guarantee faithfulness of the representations…
In this paper, we consider various graphs, namely: power graph, cyclic graph, enhanced power graph and commuting graph, on a finite semigroup $S$. For an arbitrary pair of these four graphs, we classify finite semigroups such that the…
In phylogenetics, evolution is traditionally represented in a tree-like manner. However, phylogenetic networks can be more appropriate for representing evolutionary events such as hybridization, horizontal gene transfer, and others. In…
Comparability graphs are a popular class of graphs. We introduce as the digraph analogue of comparability graphs the class of comparability digraphs. We show that many concepts such as implication classes and the knotting graph for a…
We prove an equivalence between the derived category of a variety and the equivariant/graded singularity category of a corresponding singular variety. The equivalence also holds at the dg level.
Polynomial functors model systems with interfaces: each polynomial specifies the outputs a system can produce and, for each output, the inputs it accepts. The bicategory $\mathbb{O}\mathbf{rg}$ of dynamic organizations…
In this paper, we will show dichotomy theorems for the computation of polynomials corresponding to evaluation of graph homomorphisms in Valiant's model. We are given a fixed graph $H$ and want to find all graphs, from some graph class,…
The Total Matching Polytope generalizes the Stable Set Polytope and the Matching Polytope. In this paper, we give the perfect formulation for Trees and we derive two new families of valid inequalities, the balanced biclique inequalities…
A graph $G=(V,E)$ is called a pairwise compatibility graph (PCG) if there exists an edge-weighted tree $T$ and two non-negative real numbers $d_{min}$ and $d_{max}$ such that each leaf $u$ of $T$ corresponds to a vertex $u \in V$ and there…
For any link and for any modulus $m$ we introduce an equivalence relation on the set of non-trivial m-colorings of the link (an m-coloring has values in Z/mZ). Given a diagram of the link, the equivalence class of a non-trivial m-coloring…
We study algebraic synchronization trees, i.e., initial solutions of algebraic recursion schemes over the continuous categorical algebra of synchronization trees. In particular, we investigate the relative expressive power of algebraic…
Random graph models have played a dominant role in the theoretical study of networked systems. The Poisson random graph of Erdos and Renyi, in particular, as well as the so-called configuration model, have served as the starting point for…
For a set-endofunctor $F$, a graph is triple $(V,E,g)$ with a structure map $g:E\rightarrow F V$. This model is a generalized coalgebra over the category of sets. In this note, we model graphs as coalgebras over $Set\times Set$ and use the…
Tree alignment graphs (TAGs) provide an intuitive data structure for storing phylogenetic trees that exhibits the relationships of the individual input trees and can potentially account for nested taxonomic relationships. This paper…
Presentations of categories are a well-known algebraic tool to provide descriptions of categories by means of generators, for objects and morphisms, and relations on morphisms. We generalize here this notion, in order to consider situations…
In this paper, we propose a new type of graph, denoted as "embedded-graph", and its theory, which employs a distributed representation to describe the relations on the graph edges. Embedded-graphs can express linguistic and complicated…
The evolutionary relationships among organisms have traditionally been represented using rooted phylogenetic trees. However, due to reticulate processes such as hybridization or lateral gene transfer, evolution cannot always be adequately…
Let $A$ and $B$ be finite-dimensional simple algebras with arbitrary signature over an algebraically closed field. Suppose $A$ and $B$ are graded by a semigroup $S$ so that the graded identitical relations of $A$ are the same as those of…
We consider several graphs classes defined in terms of conditions on cliques and stable sets, including CIS, split, equistable, and other related classes. We pursue a systematic study of the relations between them. As part of this study, we…