Related papers: Varieties of Unranked Tree Languages
Neural networks with tree-based sentence encoders have shown better results on many downstream tasks. Most of existing tree-based encoders adopt syntactic parsing trees as the explicit structure prior. To study the effectiveness of…
A tree-based network $N$ on $X$ is called universal if every phylogenetic tree on $X$ is a base tree for $N$. Recently, binary universal tree-based networks have attracted great attention in the literature and their existence has been…
Logic languages based on the theory of rational, possibly infinite, trees have much appeal in that rational trees allow for faster unification (due to the safe omission of the occurs-check) and increased expressivity (cyclic terms can…
We study a class of algebras that can be used as recognisers for regular languages of infinite trees.
Rooted binary perfect phylogenies provide a generalization of rooted binary unlabeled trees in which each leaf is assigned a positive integer value that corresponds in a biological setting to the count of the number of indistinguishable…
We define a bivariate polynomial for unlabeled rooted trees and show that the polynomial of an unlabeled rooted tree $T$ is the generating function of a class of subtrees of $T$. We prove that the polynomial is a complete isomorphism…
For families of all theories of arbitrary given languages we describe ranks and degrees. In particular, we characterize (non-)totally transcendental families. We apply these characterizations for the families of all theories of given…
The class of Boolean combinations of tree languages recognized by deterministic top-down tree automata (also known as deterministic root-to-frontier automata) is studied. The problem of determining for a given regular tree language whether…
The definition of graph automatic groups by Kharlampovich, Khoussainov and Miasnikov and its extension to C-graph automatic by Murray Elder and the first author raise the question of whether Thompson's group F is graph automatic. We define…
This text is devoted to the theory of varieties, which provides an important tool, based in universal algebra, for the classification of regular languages. In the introductory section, we present a number of examples that illustrate and…
Tree sets are abstract structures that can be used to model various tree-shaped objects in combinatorics. Finite tree sets can be represented by finite graph-theoretical trees. We extend this representation theory to infinite tree sets.…
In this article we provide effective characterisations of regular languages of infinite trees that belong to the low levels of the Wadge hierarchy. More precisely we prove decidability for each of the finite levels of the hierarchy; for the…
Phylogenetic networks are a generalization of phylogenetic trees allowing for the representation of non-treelike evolutionary events such as hybridization. Typically, such networks have been analyzed based on their `level', i.e. based on…
An automaton is unambiguous if for every input it has at most one accepting computation. An automaton is k-ambiguous (for k > 0) if for every input it has at most k accepting computations. An automaton is boundedly ambiguous if it is…
We study the notion of sparseness for regular languages over finite trees and infinite words. A language of trees is called sparse if the relative number of $n$-node trees in the language tends to zero, and a language of infinite words is…
Phylogenetic networks generalize phylogenetic trees, and have been introduced in order to describe evolution in the case of transfer of genetic material between coexisting species. There are many classes of phylogenetic networks, which can…
These are lecture notes on the algebraic approach to regular languages. The classical algebraic approach is for finite words; it uses semigroups instead of automata. However, the algebraic approach can be extended to structures beyond…
When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…
This is a survey article on trees, with a modest number of proofs to give a flavor of the way these topologies can be efficiently handled. Trees are defined in set-theorist fashion as partially ordered sets in which the elements below each…
Binary rooted trees, both in the ordered and in the un-ordered case, are well studied structures in the field of combinatorics. The aim of this work is to study particular patterns in these classes of trees. We consider completely…