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The totally asymmetric simple exclusion process (TASEP) is a paradigmatic stochastic model for non-equilibrium physics, and has been successfully applied to describe active transport of molecular motors along cytoskeletal filaments.…

Biological Physics · Physics 2018-07-25 Mareike Bojer , Isabella R. Graf , Erwin Frey

We study the probability distribution of a current flowing through a diffusive system connected to a pair of reservoirs at its two ends. Sufficient conditions for the occurrence of a host of possible phase transitions both in and out of…

Statistical Mechanics · Physics 2017-01-25 Yongjoo Baek , Yariv Kafri , Vivien Lecomte

Diffusion maps approximate the generator of Langevin dynamics from simulation data. They afford a means of identifying the slowly-evolving principal modes of high-dimensional molecular systems. When combined with a biasing mechanism,…

Data Analysis, Statistics and Probability · Physics 2020-07-01 Zofia Trstanova , Ben Leimkuhler , Tony Lelièvre

Using Brownian Dynamics (BD) simulations we investigate the non-equilibrium structure formation of a two-dimensional (2D) binary system of dipolar colloids propelling in opposite directions. Despite of a pronounced tendency for chain…

Soft Condensed Matter · Physics 2015-06-23 Florian Kogler , Sabine H. L. Klapp

For a class of flows on polytopes, including many examples from Evolutionary Game Theory, we describe a piecewise linear model which encapsulates the asymptotic dynamics along the heteroclinic network formed out of the polytope's vertexes…

Dynamical Systems · Mathematics 2019-12-16 Hassan Najafi Alishah , Pedro Duarte , Telmo Peixe

Piecewise-linear maps describe dynamical phenomena that switch between distinct states and readily generate complex bifurcation structures due to their strong nonlinearity. We show that two-dimensional continuous piecewise-linear maps near…

Dynamical Systems · Mathematics 2025-12-03 D. J. W. Simpson , V. Avrutin

We investigate the non-equilibrium steady state of a one-dimensional (1D) lattice gas of dimers. The dynamics is described by a totally asymmetric exclusion process (TASEP) supplemented by attachment and detachment processes, mimicking…

Statistical Mechanics · Physics 2007-05-23 P. Pierobon , T. Franosch , E. Frey

In natural settings, intermittent dynamics are ubiquitous and often arise from a coupling between external driving and spatial heterogeneities. A well-known example is the generation of transient, turbulent puffs of fluid through a pipe…

Adaptation and Self-Organizing Systems · Physics 2020-07-01 Guram Gogia , Wentao Yu , Justin C. Burton

We use numerical simulations to examine two-dimensional particle mixtures that strongly phase separate in equilibrium. When the system is externally driven in the presence of quenched disorder, plastic flow occurs in the form of meandering…

Statistical Mechanics · Physics 2009-11-13 A. Libal , C. Reichhardt , C. J. Olson Reichhardt

We study a system of coupled pendula with diffusive interactions, which could depend both on positions and on momenta. The coupling structure is defined by an undirected network, while the dynamic equations are derived from a Hamiltonian;…

Dynamical Systems · Mathematics 2024-08-06 Riccardo Bonetto , Hildeberto Jardón-Kojakhmetov , Christian Kuehn

Particles confined to a single file, in a narrow quasi-one dimensional channel, exhibit a dynamic crossover from single file diffusion to Fickian diffusion as the channel radius increases and the particles can begin to pass each other. The…

Soft Condensed Matter · Physics 2017-04-27 Sheida Ahmadi , Richard K. Bowles

Heavy and light particles are commonly found in many natural phenomena and industrial processes, such as suspensions of bubbles, dust, and droplets in incompressible turbulent flows. Based on a recent machine learning approach using a…

Fluid Dynamics · Physics 2024-06-10 Tianyi Li , Samuele Tommasi , Michele Buzzicotti , Fabio Bonaccorso , Luca Biferale

Single-file transport, where particles cannot bypass each other, has been observed in various experimental setups. In such systems, the behaviour of a tracer particle (TP) is subdiffusive, which originates from strong correlations between…

Statistical Mechanics · Physics 2019-11-13 Alexis Poncet , Olivier Bénichou , Vincent Démery , Gleb Oshanin

Asymmetric exclusion processes for particles moving on parallel channels with inhomogeneous coupling are investigated theoretically. Particles interact with hard-core exclusion and move in the same direction on both lattices, while…

Statistical Mechanics · Physics 2009-11-13 K. Tsekouras , A. B. Kolomeisky

We present the results of a numerical investigation of charged-particle transport across a synthesized magnetic configuration composed of a constant homogeneous background field and a multiscale perturbation component simulating an effect…

Statistical Mechanics · Physics 2007-05-23 Francesco Chiaravalloti , Alexander V. Milovanov , Gaetano Zimbardo

In a viscoelastic environment, the diffusion of a particle becomes non-Markovian due to the memory effect. An open question is to quantitatively explain how self-propulsion particles with directional memory diffuse in such a medium. Based…

Soft Condensed Matter · Physics 2023-07-26 HyeongTark Han , Sungmin Joo , Takahiro Sakaue , Jae-Hyung Jeon

A two parameter model for single lane car-following is introduced and its equilibrium and non-equilibrium properties are studied. Despite its simplicity, this model exhibits a rich phenomenology, analogous to that observed in real traffic,…

Statistical Mechanics · Physics 2007-05-23 M. Antoni , R. Cafiero

We study a coupled dynamics of a network and a particle system. Particles of density $\rho$ diffuse freely along edges, each of which is rewired at a rate given by a decreasing function of particle flux. We find that the coupled dynamics…

Statistical Mechanics · Physics 2008-03-24 Sang-Woo Kim , Jae Dong Noh

We study diffusion-driven pattern-formation in networks of networks, a class of multilayer systems, where different layers have the same topology, but different internal dynamics. Agents are assumed to disperse within a layer by undergoing…

Physics and Society · Physics 2018-03-28 Andreas Brechtel , Philipp Gramlich , Daniel Ritterskamp , Barbara Drossel , Thilo Gross

We use stochastic computer simulations to study the transport of a spherical cargo particle along a microtubule-like track on a planar substrate by several kinesin-like processive motors. Our newly developed adhesive motor dynamics…

Subcellular Processes · Quantitative Biology 2010-02-24 Christian B. Korn , Stefan Klumpp , Reinhard Lipowsky , Ulrich S. Schwarz
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