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Along a microtubule, certain active motors propel themselves in one direction whereas others propel themselves in the opposite direction. For example, the cargo transporting motor proteins dynein and kinesin propel themselves towards the…

Soft Condensed Matter · Physics 2016-04-01 Anton Souslov , Paul M. Goldbart

We investigate the simple one-dimensional driven model, the totally asymmetric exclusion process, coupled to mutually interactive Langmuir kinetics. This model is motivated by recent studies on clustering of motor proteins on microtubules.…

Biological Physics · Physics 2015-06-23 H. D. Vuijk , R. Rens , M. Vahabi , F. C. MacKintosh , A. Sharma

In eukaryotic cells, mitochondria form networks that range from highly fused interconnected structures to fragmented populations of individual organelles that undergo transient interactions. These structures can be described as temporal…

Biological Physics · Physics 2026-02-24 Keaton B. Holt , Camryn Zurita , Lizzy Teryoshin , Samantha C. Lewis , Elena F. Koslover

Topological phases of matter are protected from local perturbations and therefore have been thought to be robust against decoherence. However, it has not been systematically explored whether and how topological states are dynamically robust…

Mesoscale and Nanoscale Physics · Physics 2020-10-14 Yu-Wei Huang , Pei-Yun Yang , I-Chi Chen , Wei-Min Zhang

Simulating percolation and critical phenomena of labelled species inside films composed of single-component linear homogeneous macromolecules using molecular Monte Carlo method in 3 dimensions, we study dependence of these conducting…

Soft Condensed Matter · Physics 2019-09-05 Yuki Norizoe , Hiroshi Morita

We consider the asymmetric simple exclusion process (TASEP) on open network consisting of three consecutively coupled macroscopic chain segments with a shortcut between the tail of the first segment and the head of the third one. The model…

Biological Physics · Physics 2015-06-18 Nadezhda Bunzarova , Nina Pesheva , Jordan Brankov

We propose and study a conceptual one-dimensional model to explore how the combined interplay between fixed resources and particle exchanges between different parts of an extended system can affect the stationary densities in a current…

Statistical Mechanics · Physics 2025-02-10 Sourav Pal , Parna Roy , Abhik Basu

Movements of molecular motors on cytoskeletal filaments are described by directed walks on a line. Detachment from this line is allowed to occur with a small probability. Motion in the surrounding fluid is described by symmetric random…

Statistical Mechanics · Physics 2007-05-23 Theo M. Nieuwenhuizen , Stefan Klumpp , Reinhard Lipowsky

We introduce a one-dimensional non-equilibrium lattice gas model representing the processive motion of dynein molecular motors over the microtubule. We study both dynamical and stationary state properties for the model consisting of…

Statistical Mechanics · Physics 2021-02-03 Riya Nandi , Priyanka

Biopolymers serve as one-dimensional tracks on which motor proteins move to perform their biological roles. Motor protein phenomena have inspired theoretical models of one-dimensional transport, crowding, and jamming. Experiments studying…

Biological Physics · Physics 2016-05-25 Hui-Shun Kuan , M. D. Betterton

Totally asymmetric exclusion processes (TASEP) with open boundaries are known to exhibit moving shocks or delocalised domain walls (DDW) for sufficiently small equal injection and extraction rates. In contrast TASEPs in an inhomogeneous…

Statistical Mechanics · Physics 2020-07-06 Parna Roy , Anjan Kumar Chandra , Abhik Basu

In order to study the viscoelastic properties of certain complex fluids which are described in terms of a multiconnected transient network we have developed a convenient model system composed of microemulsion droplets linked by telechelic…

Soft Condensed Matter · Physics 2007-05-23 Mohammed Filali , Mohamed J. Ouazzani , Erir Michel , Raymond Aznar , Gregoire Porte , Jacqueline Appell

The cytoskeleton is an important subsystem of cells that is involved for example in cell division and locomotion. It consists of filaments that are cross-linked by molecular motors that can induce relative sliding between filaments and…

Statistical Mechanics · Physics 2007-08-08 P. K. Mohanty , K. Kruse

We study a two-lane two-species exclusion process inspired by Lin et al. (C. Lin et al. J. Stat. Mech., 2011), that exhibits a non-equilibrium pulsing phase. Particles move on two parallel one-dimensional tracks, with one open and one…

Statistical Mechanics · Physics 2017-03-31 Sarah Klein , Cécile Appert-Rolland , Martin R. Evans

A system consisting of two parallel coupled channels where particles in one of them follow the rules of totally asymmetric exclusion processes (TASEP) and in another one move as in symmetric simple exclusion processes (SSEP) is investigated…

Statistical Mechanics · Physics 2009-11-13 K. Tsekouras , A. B. Kolomeisky

In the present paper a review and numerical comparison of a special class of multi-phase traffic theories based on microscopic, kinetic and macroscopic traffic models is given. Macroscopic traffic equations with multi-valued fundamental…

Numerical Analysis · Mathematics 2015-03-20 Raul Borsche , Mark Kimathi , Axel Klar

We propose a simple model to analyze the traffic of droplets in microfluidic ``dual networks''. Such functional networks which consist of two types of channels, namely those accessible or forbidden to droplets, often display a complex…

Fluid Dynamics · Physics 2008-01-30 M. Schindler , A. Ajdari

Motor-driven cytoskeletal remodeling in cellular systems can often be accompanied by a diffusive-like effect at local scales, but distinguishing the contributions of the ordering process, such as active contraction of a network, from this…

Biological Physics · Physics 2024-08-22 Soichi Hirokawa , Heun Jin Lee , Rachel A Banks , Ana I Duarte , Bibi Najma , Matt Thomson , Rob Phillips

We consider a situation commonly encountered in microfluidics: two streams of miscible liquids are brought at a junction to flow side by side within a microchannel, allowing solutes to diffuse from one stream to the other and possibly…

Soft Condensed Matter · Physics 2007-05-23 Jean-Baptiste Salmon , Armand Ajdari

Transport of tracer particles through mesh-like environments such as biological hydrogels and polymer matrices is ubiquitous in nature. These tracers could be passive, such as colloids or active (self-propelled), such as synthetic…

Soft Condensed Matter · Physics 2022-12-08 Praveen Kumar , Rajarshi Chakrabarti
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