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The chemomechanical model of Huxley and Simmons (HS) [A. F. Huxley and R. M. Simmons, Nature 233, 533 (1971)] provides a paradigmatic description of mechanically induced collective conformational changes relevant in a variety of biological…

Biological Physics · Physics 2016-06-22 M Caruel , L Truskinovsky

Mechanically induced folding of passive cross-linkers is a fundamental biological phenomenon. A typical example is a conformational change in myosin II responsible for the power-stroke in skeletal muscles. In this paper we present an…

Biological Physics · Physics 2017-09-14 Matthieu Caruel , Jean-Marc Allain , Lev Truskinovsky

Collective electronic fluctuations in correlated materials give rise to various important phenomena, such as existence of the charge ordering, superconductivity, Mott insulating and magnetic phases, plasmon and magnon modes, and other…

Strongly Correlated Electrons · Physics 2019-03-19 E. A. Stepanov , A. Huber , A. I. Lichtenstein , M. I. Katsnelson

We address the well-known limitation of the Huxley and Simmons 1971 (HS) model. It is a statement that at physiological value of stiffness in the actomyosin complex, the distribution of the myosin motors becomes microscopically uniform (all…

Biological Physics · Physics 2021-07-05 Hudson Borja da Rocha , Lev Truskinovsky

The purpose of this article is to discuss some aspects of the convergence analysis performed in the paper [Design of momentum fractional LMS for Hammerstein nonlinear system identification with application to electrically stimulated muscle…

Optimization and Control · Mathematics 2021-03-23 Abdul Wahab , Shujaat Khan , Farrukh Zeeshan Khan

In this paper we report, clarify and broaden various recent efforts to complement the chemistry-centered models of force generation in muscles by mechanics-centered models. The physical mechanisms of interest can be grouped into two…

Biological Physics · Physics 2018-06-26 Matthieu Caruel , Lev Truskinovsky

Mechanically induced unfolding of passive crosslinkers is a fundamental biological phenomenon encountered across the scales from individual macro-molecules to cytoskeletal actin networks. In this paper we study a conceptual model of…

Biological Physics · Physics 2015-01-08 M Caruel , J. -M Allain , L Truskinovsky

In this paper homogenization of a mathematical model for plant tissue biomechanics is presented. The microscopic model constitutes a strongly coupled system of reaction-diffusion-convection equations for chemical processes in plant cells,…

Analysis of PDEs · Mathematics 2017-08-24 Andrey Piatnitski , Mariya Ptashnyk

Abstract. We present a framework for the kinematics of a material body undergoing anelastic deformation. For such processes, the material structure of the body, as reflected by the geometric structure given to the set of body points,…

Mathematical Physics · Physics 2023-01-23 Vladimir Goldshtein , Paolo Maria Mariano , Domenico Mucci , Reuven Segev

Several recent experiments in biology study systems composed of several interacting elements, for example neuron networks. Normally, measurements describe only the collective behavior of the system, even if in most cases we would like to…

Disordered Systems and Neural Networks · Physics 2010-10-12 Vitor Sessak

We investigate the properties of magnetic supracolliodal polymers -- magnetic filaments (MFs) -- with super-paramagnetic monomers, with and without Van der Waals (VdW) attraction between them. We employ molecular dynamics (MD) simulations…

Soft Condensed Matter · Physics 2020-03-10 Deniz Mostarac , Ekaterina Novak , Pedro A. Sánchez , Sofia Kantorovich

The one dimensional (1D) spin-1/2 Heisenberg-Ising model, a prototype quantum many-body system, has been intensively studied for many years. In this review, after a short introduction on some basic concepts of group theory for the…

Strongly Correlated Electrons · Physics 2023-01-18 Jiahao Yang , Xiao Wang , Jianda Wu

We study the mechanics of a reversible decohesion (unzipping) of an elastic layer subjected to quasi-static end-point loading. At the micro level the system is simulated by an elastic chain of particles interacting with a rigid foundation…

Other Quantitative Biology · Quantitative Biology 2015-05-13 F. Maddalena , D. Percivale , G. Puglisi , L. Truskinovsky

We review the physical properties of macromolecular networks, consisting of semiflexible polymers such as actin. We start by giving a theoretical analysis of the conformational statistics and mechanical response of single filaments.…

Soft Condensed Matter · Physics 2008-02-03 Erwin Frey , Klaus Kroy , Jan Wilhelm , Erich Sackmann

We propose a model for motor proteins based on a hierarchical Hamiltonian that we have previously introduced to describe protein folding. The proposed motor model has high efficiency and is consistent with a linear load-velocity response.…

Condensed Matter · Physics 2009-10-31 Alex Hansen , Mogens H. Jensen , Kim Sneppen , Giovanni Zocchi

Despite nearly a century of study of the $S=1/2$ Heisenberg model on the square lattice, there is still disagreement on the nature of its high-energy excitations. By tuning toward the Heisenberg model from the exactly soluble Ising limit,…

Strongly Correlated Electrons · Physics 2018-10-03 Ruben Verresen , Frank Pollmann , Roderich Moessner

We present a microscopic model of a disordered viscoelastic active solid, i.e. an active material whose long time behaviour is elastic as opposed to viscous. It is composed of filaments, passive crosslinks and molecular motors powered by…

Soft Condensed Matter · Physics 2014-07-15 Rhoda J. Hawkins , Tanniemola B. Liverpool

Living soft tissues appear to promote the development and maintenance of a preferred mechanical state within a defined tolerance around a so-called set-point. This phenomenon is often referred to as mechanical homeostasis. In contradiction…

Computational Engineering, Finance, and Science · Computer Science 2021-09-23 Jonas F. Eichinger , Maximilian J. Grill , Iman Davoodi Kermani , Roland C. Aydin , Wolfgang A. Wall , Jay D. Humphrey , Christian J. Cyron

Paramagnons are the collective modes that govern the spin response of nearly magnetic conductors. In some cases they mediate electron pairing leading to superconductivity. This scenario may occur in 2H-NbSe$_2$ monolayers, that feature…

Materials Science · Physics 2022-07-13 A. T. Costa , M. Costa , J. Fernández-Rossier

We create mechanical metamaterials whose response to uniaxial compression can be programmed by lateral confinement, allowing monotonic, non-monotonic and hysteretic behavior. These functionalities arise from a broken rotational symmetry…

Soft Condensed Matter · Physics 2015-06-22 Bastiaan Florijn , Corentin Coulais , Martin van Hecke
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