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Embedding static graphs in low-dimensional vector spaces plays a key role in network analytics and inference, supporting applications like node classification, link prediction, and graph visualization. However, many real-world networks…

Machine Learning · Computer Science 2021-07-23 Claudio D. T. Barros , Matheus R. F. Mendonça , Alex B. Vieira , Artur Ziviani

Persistent homology is a fundamental tool in Topological Data Analysis. The associated algebraic structure is the persistence module, a sequence of vector spaces connected by linear maps. Persistence modules admit a complete and…

Algebraic Topology · Mathematics 2026-02-13 R. Gonzalez-Diaz , M. Soriano-Trigueros , A. Torras-Casas

Recurrence is a fundamental property of dynamical systems, which can be exploited to characterise the system's behaviour in phase space. A powerful tool for their visualisation and analysis called recurrence plot was introduced in the late…

Chaotic Dynamics · Physics 2025-01-27 Norbert Marwan , Maria Carmen Romano , Marco Thiel , Jürgen Kurths

This paper contains an expository account of persistent homology and its usefulness for topological data analysis. An alternative foundation for level-set persistence is presented using sheaves and cosheaves.

Algebraic Topology · Mathematics 2015-03-05 Justin Curry

The persistence diagram (PD) is an increasingly popular topological descriptor. By encoding the size and prominence of topological features at varying scales, the PD provides important geometric and topological information about a space.…

We address here two major challenges presented by dynamic data mining: 1) the stability challenge: we have implemented a rigorous incremental density-based clustering algorithm, independent from any initial conditions and ordering of the…

Artificial Intelligence · Computer Science 2008-11-04 Alain Lelu , Martine Cadot , Pascal Cuxac

As the size of data increase, persistence diagrams often exhibit structured asymptotic behavior, converging weakly to a Radon measure. However, conventional vector summaries such as persistence landscapes are not well-behaved in this…

Algebraic Topology · Mathematics 2025-12-02 Wanchen Zhao , Peter Bubenik

Link prediction is an important learning task for graph-structured data. In this paper, we propose a novel topological approach to characterize interactions between two nodes. Our topological feature, based on the extended persistent…

Machine Learning · Computer Science 2021-06-15 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Chao Chen

Persistent homology is a popular computational tool for analyzing the topology of point clouds, such as the presence of loops or voids. However, many real-world datasets with low intrinsic dimensionality reside in an ambient space of much…

Machine Learning · Computer Science 2024-11-01 Sebastian Damrich , Philipp Berens , Dmitry Kobak

We develop a new approach to recurrence and the existence of non-constant harmonic functions on infinite weighted graphs. The approach is based on the capacity of subsets of metric boundaries with respect to intrinsic metrics. The main tool…

Functional Analysis · Mathematics 2023-01-06 Daniel Lenz , Simon Puchert , Marcel Schmidt

Motivated by persistent homology and topological data analysis, we consider formal sums on a metric space with a distinguished subset. These formal sums, which we call persistence diagrams, have a canonical 1-parameter family of metrics…

Algebraic Topology · Mathematics 2025-02-19 Peter Bubenik , Iryna Hartsock

Persistent homology (PH) is a recently developed theory in the field of algebraic topology to study shapes of datasets. It is an effective data analysis tool that is robust to noise and has been widely applied. We demonstrate a general…

Signal Processing · Electrical Eng. & Systems 2020-05-05 Yu-Min Chung , Chuan-Shen Hu , Yu-Lun Lo , Hau-Tieng Wu

We introduce topological conditions on a broad class of functionals that ensure that the persistent homology modules of their associated sublevel set filtration admit persistence diagrams, which, in particular, implies that they satisfy…

Algebraic Topology · Mathematics 2024-01-08 Ulrich Bauer , Anibal M. Medina-Mardones , Maximilian Schmahl

In several environmental applications data are functions of time, essentially con- tinuous, observed and recorded discretely, and spatially correlated. Most of the methods for analyzing such data are extensions of spatial statistical tools…

Methodology · Statistics 2011-06-28 Elvira Romano , Antonio Balzanella , Rosanna Verde

The persistence diagram is a central object in the study of persistent homology and has also been investigated in the context of random topology. The more recent notion of the verbose diagram (a.k.a. verbose barcode) is a refinement of the…

Algebraic Topology · Mathematics 2025-09-29 Jeong-hwi Joe , Woojin Kim , Cheolwoo Park

Persistence diagrams are useful displays that give a summary information regarding the topological features of some phenomenon. Usually, only one persistence diagram is available, and replicated persistence diagrams are needed for…

Algebraic Topology · Mathematics 2019-05-16 Sarit Agami

Traditionally, graph quality metrics focus on readability, but recent studies show the need for metrics which are more specific to the discovery of patterns in graphs. Cluster analysis is a popular task within graph analysis, yet there is…

Data Structures and Algorithms · Computer Science 2019-08-22 Amyra Meidiana , Seok-Hee Hong , Peter Eades , Daniel Keim

This paper is a survey of persistent homology, primarily as it is used in topological data analysis. It includes the theory of persistence modules, as well as stability theorems for persistence barcodes, generalized persistence,…

Algebraic Topology · Mathematics 2020-04-03 Gunnar Carlsson

How can the `affinity' or `strength' of ties of a random graph be characterized and compactly represented? How can concepts like Fourier and inverse-Fourier like transform be developed for graph data? To do so, we introduce a new…

Statistics Theory · Mathematics 2015-12-11 Subhadeep Mukhopadhyay

The theory of zigzag persistence is a substantial extension of persistent homology, and its development has enabled the investigation of several unexplored avenues in the area of topological data analysis. In this paper, we discuss three…

Computational Geometry · Computer Science 2011-08-18 Andrew Tausz , Gunnar Carlsson