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The efficient execution of image processing algorithms is an active area of Bioinformatics. In image processing, one of the classes of algorithms or computing pattern that works with irregular data structures is the Irregular Wavefront…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-05-04 Jeremias Gomes , George Teodoro

New challenges in Astronomy and Astrophysics (AA) are urging the need for a large number of exceptionally computationally intensive simulations. "Exascale" (and beyond) computational facilities are mandatory to address the size of…

Motivated by the emergence of multicore architectures, and the reality that parallelism is rarely used for analysis in observational astronomy, we demonstrate how general users may employ tightly-coupled multiprocessors in scriptable…

Astrophysics · Physics 2007-10-23 Michael S. Noble

Many algorithms have been parallelized successfully on the Intel Xeon Phi coprocessor, especially those with regular, balanced, and predictable data access patterns and instruction flows. Irregular and unbalanced algorithms are harder to…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-17 S. Ali Mirsoleimani , Aske Plaat , Jaap van den Herik , Jos Vermaseren

Convolution layers are prevalent in many classes of deep neural networks, including Convolutional Neural Networks (CNNs) which provide state-of-the-art results for tasks like image recognition, neural machine translation and speech…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-08-22 Evangelos Georganas , Sasikanth Avancha , Kunal Banerjee , Dhiraj Kalamkar , Greg Henry , Hans Pabst , Alexander Heinecke

Efficient ordinary differential equation solvers for chemical kinetics must take into account the available thread and instruction-level parallelism of the underlying hardware, especially on many-core coprocessors, as well as the numerical…

Computational Physics · Physics 2018-03-28 Christopher P. Stone , Andrew T. Alferman , Kyle E. Niemeyer

The analysis of complex multiphysics astrophysical simulations presents a unique and rapidly growing set of challenges: reproducibility, parallelization, and vast increases in data size and complexity chief among them. In order to meet…

Instrumentation and Methods for Astrophysics · Physics 2015-05-20 Matthew J. Turk , Britton D. Smith , Jeffrey S. Oishi , Stephen Skory , Samuel W. Skillman , Tom Abel , Michael L. Norman

The nonuniform fast Fourier transform (NUFFT) enables spectral methods for problems with irregularly spaced samples, with applications in medical imaging, molecular dynamics, and kinetic plasma simulations. Existing implementations are…

Computational Engineering, Finance, and Science · Computer Science 2026-05-12 Paul Fischill , Andreas Adelmann , Sriramkrishnan Muralikrishnan

We introduce a lightweight and accurate architecture for resource-efficient visual correspondence. Our method, dubbed XFeat (Accelerated Features), revisits fundamental design choices in convolutional neural networks for detecting,…

Computer Vision and Pattern Recognition · Computer Science 2024-05-01 Guilherme Potje , Felipe Cadar , Andre Araujo , Renato Martins , Erickson R. Nascimento

High performance computing has been used in various fields of astrophysical research. But most of it is implemented on massively parallel systems (supercomputers) or graphical processing unit clusters. With the advent of multicore…

Instrumentation and Methods for Astrophysics · Physics 2013-07-30 Navtej Singh , Lisa-Marie Browne , Ray Butler

Discord is a refinement of the concept of anomalous subsequence of a time series. The task of discords discovery is applied in a wide range of subject domains related to time series: medicine, economics, climate modeling, etc. In this…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-03 Andrey Polyakov , Mikhail Zymbler

Astrocomp is a joint project, developed by the INAF-Astrophysical Observatory of Catania, University of Roma La Sapienza and Enea. The project has the goal of providing the scientific community of a web-based user-friendly interface which…

Astrophysics · Physics 2009-11-10 U. Becciani , R. Capuzzo Dolcetta , A. Costa , P. Di Matteo , P. Miocchi , V. Rosato

The gap between the cost of moving data and the cost of computing continues to grow, making it ever harder to design iterative solvers on extreme-scale architectures. This problem can be alleviated by alternative algorithms that reduce the…

In our work we analyze computational aspects of the problem of numerical integration in finite element calculations and consider an OpenCL implementation of related algorithms for processors with wide vector registers. As a platform for…

Mathematical Software · Computer Science 2014-03-03 Filip Krużel , Krzysztof Banaś

We describe a program for the parallel implementation of multiple runs of XSTAR, a photoionization code that is used to predict the physical properties of an ionized gas from its emission and/or absorption lines. The parallelization…

High Energy Astrophysical Phenomena · Physics 2018-01-03 Ashkbiz Danehkar , Michael A. Nowak , Julia C. Lee , Randall K. Smith

The Crossroads supercomputer was designed to simulate some of the most complex physical devices in the world. These simulations routinely require 1/2 petabyte or more of system memory running on thousands of compute nodes for months at a…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-11 Galen M. Shipman , Sriram Swaminarayan , Gary Grider , Jim Lujan , R. Joseph Zerr

This paper satisfies the reproducibility challenge of the Student Cluster Competition at Supercomputing 2017. We attempted to reproduce the results of H\"{o}hnerbach et al. (2016) for an implementation of a vectorized code for the Tersoff…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-08-22 James Sullivan , Collin Weir , Austin Reichert , R. Todd Evans , W. Cyrus Proctor , Nicolas Thorne

The VERTEX code is employed for multi-dimensional neutrino-radiation hydrodynamics simulations of core-collapse supernova explosions from first principles. The code is considered state-of-the-art in supernova research and it has been used…

Computational Physics · Physics 2014-04-08 Andreas Marek , Markus Rampp , Florian Hanke , Hans-Thomas Janka

Here we present qFlex, a flexible tensor network based quantum circuit simulator. qFlex can compute both exact amplitudes, essential for the verification of the quantum hardware, as well as low fidelity amplitudes, in order to mimic…

Astrophysical explosions such as supernovae are fascinating events that require sophisticated algorithms and substantial computational power to model. Castro and MAESTROeX are nuclear astrophysics codes that simulate thermonuclear fusion in…

Instrumentation and Methods for Astrophysics · Physics 2020-07-13 Max P. Katz , Ann Almgren , Maria Barrios Sazo , Kiran Eiden , Kevin Gott , Alice Harpole , Jean M. Sexton , Don E. Willcox , Weiqun Zhang , Michael Zingale
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