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As modern scientific simulations grow ever more in size and complexity, even their analysis and post-processing becomes increasingly demanding, calling for the use of HPC resources and methods. yt is a parallel, open source post-processing…

Instrumentation and Methods for Astrophysics · Physics 2019-10-18 Salvatore Cielo , Luigi Iapichino , Fabio Baruffa

Many complex problems, such as natural language processing or visual object detection, are solved using deep learning. However, efficient training of complex deep convolutional neural networks for large data sets is computationally…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-06 Andre Viebke , Sabri Pllana , Suejb Memeti , Joanna Kolodziej

While many of the architectural details of future exascale-class high performance computer systems are still a matter of intense research, there appears to be a general consensus that they will be strongly heterogeneous, featuring…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-05 Moritz Kreutzer , Jonas Thies , Melven Röhrig-Zöllner , Andreas Pieper , Faisal Shahzad , Martin Galgon , Achim Basermann , Holger Fehske , Georg Hager , Gerhard Wellein

We give an overview of QPACE 2, which is a custom-designed supercomputer based on Intel Xeon Phi processors, developed in a collaboration of Regensburg University and Eurotech. We give some general recommendations for how to write…

We describe a methodology for designing efficient parallel and distributed scientific software. This methodology utilizes sequences of mechanizable algebra--based optimizing transformations. In this study, we apply our methodology to the…

Software Engineering · Computer Science 2008-11-18 Harry B. Hunt , Lenore R. Mullin , Daniel J. Rosenkrantz , James E. Raynolds

We present details of our implementation of the Wuppertal adaptive algebraic multigrid code DD-$\alpha$AMG on SIMD architectures, with particular emphasis on the Intel Xeon Phi processor (KNC) used in QPACE 2. As a smoother, the algorithm…

Computational Physics · Physics 2015-12-15 Simon Heybrock , Matthias Rottmann , Peter Georg , Tilo Wettig

In this paper we deal with the impact of multi and many-core processor architectures on simulation. Despite the fact that modern CPUs have an increasingly large number of cores, most softwares are still unable to take advantage of them. In…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-07-30 Gabriele D'Angelo , Stefano Ferretti , Moreno Marzolla

We present a highly parallel implementation of the cross-correlation of time-series data using graphics processing units (GPUs), which is scalable to hundreds of independent inputs and suitable for the processing of signals from "Large-N"…

Instrumentation and Methods for Astrophysics · Physics 2011-08-02 M. A. Clark , P. C. La Plante , L. J. Greenhill

We present a cross-architecture high-order heterogeneous Navier-Stokes simulation solver, XFluids, for compressible reacting multicomponent flows on different platforms. The multi-component reacting flows are ubiquitous in many scientific…

Computational Physics · Physics 2024-07-11 Jinlong Li , Shucheng Pan

Using \textit{multiple streams} can improve the overall system performance by mitigating the data transfer overhead on heterogeneous systems. Prior work focuses a lot on GPUs but little is known about the performance impact on (Intel Xeon)…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-03-30 Zhaokui Li , Jianbin Fang , Tao Tang , Xuhao Chen , Cheng Chen , Canqun Yang

We present direct astrophysical N-body simulations with up to a few million bodies using our parallel MPI/CUDA code on large GPU clusters in China, Ukraine and Germany, with different kinds of GPU hardware. These clusters are directly…

Instrumentation and Methods for Astrophysics · Physics 2013-12-09 P. Berczik , R. Spurzem , L. Wang , S. Zhong , O. Veles , I. Zinchenko , S. Huang , M. Tsai , G. Kennedy , S. Li , L. Naso , C. Li

In this paper we explore the performance of Intel Xeon MAX CPU Series, representing the most significant new variation upon the classical CPU architecture since the Intel Xeon Phi Processor. Given the availability of a large on-package…

Performance · Computer Science 2023-09-19 Istvan Z Reguly

This work arises on the environment of the ExaNeSt project aiming at design and development of an exascale ready supercomputer with low energy consumption profile but able to support the most demanding scientific and technical applications.…

Instrumentation and Methods for Astrophysics · Physics 2019-11-01 David Goz , Sara Bertocco , Luca Tornatore , Giuliano Taffoni

The FFT of three-dimensional (3D) input data is an important computational kernel of numerical simulations and is widely used in High Performance Computing (HPC) codes running on a large number of processors. Performance of many scientific…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-08-28 Vivek Gavane , Supriya Prabhugawankar , Shivam Garg , Archana Achalere , Rajendra Joshi

Sparse matrix vector multiplication (SpMV) is one of the most common operations in scientific and high-performance applications, and is often responsible for the application performance bottleneck. While the sparse matrix representation has…

Mathematical Software · Computer Science 2018-05-31 Shizhao Chen , Jianbin Fang , Donglin Chen , Chuanfu Xu , Zheng Wang

Deep learning is an important component of big-data analytic tools and intelligent applications, such as, self-driving cars, computer vision, speech recognition, or precision medicine. However, the training process is computationally…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-02-28 Andre Viebke , Suejb Memeti , Sabri Pllana , Ajith Abraham

Benchmarking and comparing performance of a scientific simulation across hardware platforms is a complex task. When the simulation in question is constructed with an asynchronous, many-task (AMT) runtime offloading work to GPUs, the task…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-13 Patrick Diehl , Gregor Daiss , Kevin Huck , Dominic Marcello , Sagiv Shiber , Hartmut Kaiser , Juhan Frank , Geoffrey C. Clayton , Dirk Pflueger

This paper presents the research work on multicore microcontrollers using parallel, and time critical programming for the embedded systems. Due to the high complexity and limitations, it is very hard to work on the application development…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-04-13 Prerna Saini , Ankit Bansal , Abhishek Sharma

We review our work done to optimize the staggered conjugate gradient (CG) algorithm in the MILC code for use with the Intel Knights Landing (KNL) architecture. KNL is the second gener- ation Intel Xeon Phi processor. It is capable of…

High Energy Physics - Lattice · Physics 2016-11-04 Carleton DeTar , Douglas Doerfler , Steven Gottlieb , Ashish Jha , Dhiraj Kalamkar , Ruizi Li , Doug Toussaint

We present preliminary results on the parallelization of a Tree-Code for evaluating gravitational forces in N-body astrophysical systems. Our HPF/CRAFT implementation on a CRAY T3E machine attained an encouraging speed-up behavior, reaching…

Astrophysics · Physics 2009-10-31 Roberto Capuzzo-Dolcetta , Paolo Miocchi