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Evolutionary mechanism in a self-organized system cause some functional changes that force to adapt new conformation of the interaction pattern between the components of that system. Measuring the structural differences one can retrace the…

Quantitative Methods · Quantitative Biology 2012-10-19 Anirban Banerjee

We present a graph-theoretic model for dynamical systems $(X,\sigma)$ given by a surjective local homeomorphism $\sigma$ on a totally disconnected compact metrizable space $X$. In order to make the dynamics appear explicitly in the graph,…

Operator Algebras · Mathematics 2024-02-13 Pere Ara , Joan Claramunt

Multivariate renormalisation techniques are implemented in order to build, study and then renormalise at the poles, branched zeta functions associated with trees. For this purpose, we first prove algebraic results and develop analytic…

Mathematical Physics · Physics 2020-07-27 Pierre Clavier , Li Guo , Sylvie Paycha , Bin Zhang

The frog model starts with one active particle at the root of a graph and some number of dormant particles at all nonroot vertices. Active particles follow independent random paths, waking all inactive particles they encounter. We prove…

Probability · Mathematics 2019-09-25 Tobias Johnson , Matthew Junge

We construct measures invariant with respect to equivalence relations which are graphed by horospheric products of trees. The construction is based on using conformal systems of boundary measures on treed equivalence relations. The…

Probability · Mathematics 2009-06-30 Vadim A. Kaimanovich , Florian Sobieczky

Each natural number can be associated with some tree graph. Namely, a natural number $n$ can be factorized as $$ n = p_1^{\alpha_1}\ldots p_k^{\alpha_k},$$ where $p_i$ are distinct prime numbers. Since $\alpha_i$ are naturals, they can be…

Number Theory · Mathematics 2022-10-13 Vitalii V. Iudelevich

In this paper we try to establish a connection between a three-dimensional Lotka--Volterra dynamical system and two-dimensional topological surgery. There are many physical phenomena exhibiting two-dimensional topological surgery through a…

Dynamical Systems · Mathematics 2008-12-15 S. Antoniou , S. Lambropoulou

Epicormic branches arise from dormant buds patterned during the growth of previous years. Dormant epicormic buds remain on the surface of trees, pushed outward from the pith during secondary growth, but maintaining vascular connections.…

Quantitative Methods · Quantitative Biology 2018-12-11 Mitchell Eithun , Daniel H. Chitwood , James Larson , Gregory Lang , Elizabeth Munch

Dendrograms are a way to represent evolutionary relationships between organisms. Nowadays, these are inferred based on the comparison of genes or protein sequences by taking into account their differences and similarities. The genetic…

Molecular Networks · Quantitative Biology 2019-09-09 Daniel Gamermann , Arnau Montagud , J. Alberto Conejero , Pedro Fernández de Córdoba , Javier F. Urchueguía

The problem of graph burning was firstly introduced as a model for different processes of social and network interactions. Recently, the authors of the present paper developed methods of algebraic topology for investigation of this problem.…

Algebraic Topology · Mathematics 2026-03-17 Yuri Muranov , Anna Muranova

G-structures and Cartan geometries are two major approaches to the description of geometric structures (in the sense of differential geometry) on manifolds of some fixed dimension $n$. We show that both descriptions naturally extend to the…

Differential Geometry · Mathematics 2025-04-25 Andreas Cap , Micha Andrzej Wasilewicz

Recent work has established that large informatics graphs such as social and information networks have non-trivial tree-like structure when viewed at moderate size scales. Here, we present results from the first detailed empirical…

Data Structures and Algorithms · Computer Science 2016-05-04 Aaron B. Adcock , Blair D. Sullivan , Michael W. Mahoney

Line intensity mapping offers a new avenue for constraining cosmological parameters in the high redshift Universe. However measurements of the growth of structure, a sensitive probe of gravity, are affected by a well known degeneracy with…

Cosmology and Nongalactic Astrophysics · Physics 2019-07-04 Emanuele Castorina , Martin White

The Calculus of Wrapped Compartments is a framework based on stochastic multiset rewriting in a compartmentalised setting originally developed for the modelling and analysis of biological interactions. In this paper, we propose to use this…

Populations and Evolution · Quantitative Biology 2015-05-11 Pablo Ramon , Angelo Troina

We introduce and study dynamical systems and measures on stationary generalized Bratteli diagrams $B$ that are represented as the union of countably many classical Pascal-Bratteli diagrams. We describe all ergodic tail invariant measures on…

Dynamical Systems · Mathematics 2025-07-02 Sergey Bezuglyi , Artem Dudko , Olena Karpel

Reconstruction problems have been studied in a number of contexts including biology, information theory and and statistical physics. We consider the reconstruction problem for random $k$-colourings on the $\Delta$-ary tree for large $k$.…

Probability · Mathematics 2009-11-13 Allan Sly

Although it has been notoriously difficult to pin down precisely what it is that makes life so distinctive and remarkable, there is general agreement that its informational aspect is one key property, perhaps the key property. The unique…

Adaptation and Self-Organizing Systems · Physics 2012-12-20 Sara Imari Walker , Paul C. W. Davies

We propose a novel approach for studying rooted trees by using functions that we will call descent functions. We provide a construction method for rooted trees that allows to study their properties through the use of descent functions.…

Number Theory · Mathematics 2014-09-23 Marco Abrate , Stefano Barbero , Umberto Cerruti , Nadir Murru

In this work, a new model for macroscopic plant tissue growth based on dynamical Riemannian geometry is presented. We treat 1D and 2D tissues as continuous, deformable, growing geometries for sizes larger than 1mm. The dynamics of the…

Tissues and Organs · Quantitative Biology 2016-02-05 Julia Pulwicki

We introduce and study a notion of Borel order dimension for Borel quasi orders. It will be shown that this notion is closely related to the notion of Borel dichromatic number for simple directed graphs. We prove a dichotomy, which…

Logic · Mathematics 2024-09-11 Dilip Raghavan , Ming Xiao
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