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We propose a protein model based on a hierarchy of constraints that force the protein to follow certain pathways when changing conformation. The model exhibits a first order phase transition, cooperativity and is exactly solvable. It also…

Condensed Matter · Physics 2015-06-25 Alex Hansen , Mogens H. Jensen , Kim Sneppen , Giovanni Zocchi

Collective behavior of self-propelled particles is observed on a microscale for swimmers such as sperm and bacteria as well as for protein filaments in motility assays. The properties of such systems depend both on their dimensionality and…

Soft Condensed Matter · Physics 2014-01-07 Masoud Abkenar , Kristian Marx , Thorsten Auth , Gerhard Gompper

A simple periodically driven system displaying rich behavior is introduced and studied. The system self-organizes into a mosaic of static ordered regions with three possible patterns, which are threaded by one-dimensional paths on which a…

Statistical Mechanics · Physics 2015-03-24 Daniel Hexner , Dov Levine

Social mobilization often fails not for a lack of collective interest, but because of fierce competition between rival movements for the same limited pool of participants. We generalize the classic threshold model of collective behavior to…

Physics and Society · Physics 2026-05-14 Bianca Y. S. Ishikawa , José F. Fontanari

Within living cells, the transport of cargo is accomplished by groups of molecular motors. Such collective transport could utilize mechanisms which emerge from inter-motor interactions in ways that are yet to be fully understood. Here we…

Biomolecules · Quantitative Biology 2016-10-04 David Ando , Michelle K. Mattson , Jing Xu , Ajay Gopinathan

We study the phase behaviour of a fluid composed of particles which interact via a pair potential that is repulsive for large inter-particle distances, is attractive at intermediate distances and is strongly repulsive at short distances…

Soft Condensed Matter · Physics 2008-09-17 A. J. Archer , C. Ionescu , D. Pini , L. Reatto

Explaining the emergence and maintenance of cooperation among selfish individuals from an evolutionary perspective remains a grand challenge in biology, economy, and social sciences. Social exclusion is believed to be an answer to this…

Physics and Society · Physics 2022-09-13 Linjie Liu , Zhilong Xiao , Xiaojie Chen , Attila Szolnoki

This work presents a microscopic model to describe pedestrian flows based on the social force theory. The aim of this study is twofold: (1) developing a realistic model that can be used as a tool for designing pedestrian-friendly…

Multiagent Systems · Computer Science 2026-01-07 Péter Molnár

Ecology and evolution are inherently linked, and studying a mathematical model that considers both holds promise of insightful discoveries related to the dynamics of cooperation. In the present article, we use the prisoner's dilemma (PD)…

Populations and Evolution · Quantitative Biology 2021-08-10 Sayantan Nag Chowdhury , Srilena Kundu , Jeet Banerjee , Matjaž Perc , Dibakar Ghosh

It has been suggested that major transitions in evolution require the emergence of novelties, often associated to the cooperative behaviour of previously existing objects or agents. A key innovation involves the first cooperative…

Adaptation and Self-Organizing Systems · Physics 2015-08-07 Jordi Piñero , Ricard Solé

Without contributing, defectors take more benefit from social resources than cooperators which is the reflection of a specific character of individuals. However, natural physical mechanisms of our society promote cooperation. Thus, in the…

Populations and Evolution · Quantitative Biology 2021-09-16 Bijan Sarkar

We show that fluid organizations display higher levels of cooperation than attainable by groups with either a fixed social structure or lacking one altogether. By moving within the organization, individuals cause restructurings that…

chao-dyn · Physics 2008-02-03 Natalie Glance , Bernardo Huberman

We study analytically and numerically a model metabolic cycle composed of an arbitrary number of species of catalytically active particles. Each species converts a substrate into a product, the latter being used as the substrate by the next…

Soft Condensed Matter · Physics 2023-09-29 Vincent Ouazan-Reboul , Jaime Agudo-Canalejo , Ramin Golestanian

A simple model for the nonlinear collective transport of interacting particles in a random medium with strong disorder is introduced and analyzed. A finite threshold for the driving force divides the behavior into two regimes characterized…

Condensed Matter · Physics 2009-10-28 Joe Watson , Daniel S. Fisher

Many active biological particles, such as swimming microorganisms or motor-proteins, do work on their environment by going though a periodic sequence of shapes. Interactions between particles can lead to the phase-synchronization of their…

Soft Condensed Matter · Physics 2022-07-26 Brato Chakrabarti , Michael J. Shelley , Sebastian Fürthauer

Understanding the origins of volunteerism and free-riding is crucial in collective action situations where a sufficient number of cooperators is necessary to achieve shared benefits, such as in vaccination campaigns and social change…

Physics and Society · Physics 2023-03-06 Alina Glaubitz , Feng Fu

The paradox of cooperation among selfish individuals still puzzles scientific communities. Although a large amount of evidence has demonstrated that cooperator clusters in spatial games are effective to protect cooperators against the…

Physics and Society · Physics 2015-06-24 Han-Xin Yang , Zhihai Rong , Wen-Xu Wang

Active mobility offers an array of physical, emotional, and social wellbeing benefits. However, with the proliferation of the sharing economy, new nonmotorized means of transport are entering the fold, complementing some existing mobility…

Computers and Society · Computer Science 2021-12-03 M Said , A Biehl , A Stathopoulos

We present a mathematical model for optimizing breakaway strategies in competitive cycling, balancing power expenditure, aerodynamic drag, and crashing. Our framework incorporates probabilistic crash dynamics, allowing a cyclist's risk…

Optimization and Control · Mathematics 2025-07-08 J. Chico-Vázquez , I. M. Griffiths

A theoretical model is presented for early evolutionary cell sorting within cellular aggregates. The model involves an energy-saving mechanism and principles of collective self-organization analogous to those observed in bicycle pelotons…

Populations and Evolution · Quantitative Biology 2019-02-21 Hugh Trenchard