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We define a distance analogous to the Gromov-Hausdorff distance that enables the comparison of arbitrary quasi-isometric spaces. We also investigate properties preserved under limits with respect to this distance, as well as properties of…

Metric Geometry · Mathematics 2026-05-28 Alexei Naianzin

In this paper, we investigate compact ultrametric measure spaces which form a subset $\mathcal{U}^w$ of the collection of all metric measure spaces $\mathcal{M}^w$. Similar as for the ultrametric Gromov-Hausdorff distance on the collection…

Metric Geometry · Mathematics 2021-07-05 Facundo Mémoli , Axel Munk , Zhengchao Wan , Christoph Weitkamp

Using the wedge sum of metric spaces, for all compact metrizable spaces, we construct a topological embedding of the compact metrizable space into the set of all metric trees in the Gromov--Hausdorff space with finite prescribed values. As…

Metric Geometry · Mathematics 2021-12-13 Yoshito Ishiki

Wasserstein distance, which measures the discrepancy between distributions, shows efficacy in various types of natural language processing (NLP) and computer vision (CV) applications. One of the challenges in estimating Wasserstein distance…

Machine Learning · Statistics 2022-06-27 Makoto Yamada , Yuki Takezawa , Ryoma Sato , Han Bao , Zornitsa Kozareva , Sujith Ravi

Tree comparison metrics have proven to be an invaluable aide in the reconstruction and analysis of phylogenetic (evolutionary) trees. The path-length distance between trees is a particularly attractive measure as it reflects differences in…

Data Structures and Algorithms · Computer Science 2018-11-05 David Bryant , Celine Scornavacca

The quartet distance is a measure of similarity used to compare two unrooted phylogenetic trees on the same set of $n$ leaves, defined as the number of subsets of four leaves related by a different topology in both trees. After a series of…

Data Structures and Algorithms · Computer Science 2020-12-03 Bartłomiej Dudek , Paweł Gawrychowski

For any fixed measure $H$ that maps graphs to real numbers, the MinH problem is defined as follows: given a graph $G$, an integer $k$, and a target $\tau$, is there a set $S$ of $k$ vertices that can be deleted, so that $H(G - S)$ is at…

Data Structures and Algorithms · Computer Science 2019-10-01 Serge Gaspers , Joshua Lau

We combine the pointed Gromov-Hausdorff metric [Ron10] with the locally $C^0$ distance to obtain the pointed $C^0$-Gromov-Hausdorff distance between maps of possibly different non-compact pointed metric spaces. The latter is then combined…

Dynamical Systems · Mathematics 2022-04-15 Luis Eduardo Osorio Acevedo , Henry Mauricio Sánchez Sanabria

A labeled metric space is intuitively speaking a metric space together with a special set of points to be understood as the geometric boundary of the space. We study basic properties of a recently introduced labeled Gromov-Hausdorff…

Metric Geometry · Mathematics 2022-10-04 Reijo Jaakkola , Antti Kykkänen

It is shown that for any two compact metric spaces there exists an "optimal" correspondence which the Gromov-Hausdorff distance is attained at. Each such correspondence generates isometric embeddings of these spaces into a compact metric…

Metric Geometry · Mathematics 2016-03-30 Alexander Ivanov , Stavros Iliadis , Alexey Tuzhilin

Optimal transport provides a metric which quantifies the dissimilarity between probability measures. For measures supported in discrete metric spaces, finding the optimal transport distance has cubic time complexity in the size of the…

Machine Learning · Computer Science 2024-01-30 Samantha Chen , Puoya Tabaghi , Yusu Wang

Kondo et al. (DS 2014) proposed methods for computing distances between unordered rooted trees by transforming an instance of the distance computing problem into an instance of the integer programming problem. They showed that the tree edit…

Data Structures and Algorithms · Computer Science 2017-06-13 Eunpyeong Hong , Yasuaki Kobayashi , Akihiro Yamamoto

An important operation in geometry processing is finding the correspondences between pairs of shapes. The Gromov-Hausdorff distance, a measure of dissimilarity between metric spaces, has been found to be highly useful for nonrigid shape…

Computer Vision and Pattern Recognition · Computer Science 2013-11-25 Alon Shtern , Ron Kimmel

Rotation distance between rooted binary trees measures the number of simple operations it takes to transform one tree into another. There are no known polynomial-time algorithms for computing rotation distance. We give an efficient,…

Data Structures and Algorithms · Computer Science 2018-03-19 Sean Cleary , Katherine St. John

Building trees to represent or to fit distances is a critical component of phylogenetic analysis, metric embeddings, approximation algorithms, geometric graph neural nets, and the analysis of hierarchical data. Much of the previous…

Data Structures and Algorithms · Computer Science 2024-09-04 Joon-Hyeok Yim , Anna C. Gilbert

The Gromov-Wasserstein distance is a notable extension of optimal transport. In contrast to the classic Wasserstein distance, it solves a quadratic assignment problem that minimizes the pair-wise distance distortion under the transportation…

Machine Learning · Computer Science 2024-04-16 Wei Zhang , Zihao Wang , Jie Fan , Hao Wu , Yong Zhang

The \emph{distance-number} of a graph $G$ is the minimum number of distinct edge-lengths over all straight-line drawings of $G$ in the plane. This definition generalises many well-known concepts in combinatorial geometry. We consider the…

Combinatorics · Mathematics 2008-09-09 Paz Carmi , Vida Dujmović , Pat Morin , David R. Wood

The Robinson-Foulds (RF) distance is by far the most widely used measure of dissimilarity between trees. Although the distribution of these distances has been investigated for twenty years, an algorithm that is explicitly polynomial time…

Populations and Evolution · Quantitative Biology 2008-10-07 David Bryant , Mike Steel

An added edge to a graph is called an inset edge. Predicting k inset edges which minimize the average distance of a graph is known to be NP-Hard. When k = 1 the complexity of the problem is polynomial. In this paper, we further find the…

Data Structures and Algorithms · Computer Science 2020-08-14 M. H. Khalifeh , A. -H. Esfahanian

For each arbitrary finite group $G$, we consider a suitable notion of Gromov Hausdorff distance between compact $G$ metric spaces and derive lower bounds based on equivariant topology methods. As applications, we prove equivariant rigidity…

Metric Geometry · Mathematics 2026-01-29 Sunhyuk Lim , Facundo Memoli