Related papers: Computing the Gromov-Hausdorff Distance for Metric…
The course was given at Peking University, Fall 2019. We discuss the following subjects: (1) Introduction to general topology, hyperspaces, metric and pseudometric spaces, graph theory. (2) Graphs in metric spaces, minimum spanning tree,…
In the present paper we investigate the Gromov--Hausdorff distances between a bounded metric space $X$ and so called simplex, i.e., a metric space all whose non-zero distances are the same. In the case when the simplex's cardinality does…
Many applications in pattern recognition represent patterns as a geometric graph. The geometric graph distance (GGD) has recently been studied as a meaningful measure of similarity between two geometric graphs. Since computing the GGD is…
The Gromov-Hausdorff distance is a dissimilarity metric capturing how far two spaces are from being isometric. The Gromov-Prokhorov distance is a similar notion for metric measure spaces. In this paper, we study the topological dimension of…
An important problem in geometric computing is defining and computing similarity between two geometric shapes, e.g. point sets, curves and surfaces, etc. Important geometric and topological information of many shapes can be captured by…
We present a new class of metrics for unrooted phylogenetic $X$-trees derived from the Gromov-Hausdorff distance for (compact) metric spaces. These metrics can be efficiently computed by linear or quadratic programming. They are robust…
Geometric graphs appear in many real-world data sets, such as road networks, sensor networks, and molecules. We investigate the notion of distance between embedded graphs and present a metric to measure the distance between two geometric…
We give algorithms to compute the Fr\'echet distance of trees and graphs with bounded tree width. Our algorithms run in $O(n^2)$ time for trees of bounded degree, and $O(n^2\sqrt{n \log n})$ time for trees of arbitrary degree. For graphs of…
Graph similarity metrics serve far-ranging purposes across many domains in data science. As graph datasets grow in size, scientists need comparative tools that capture meaningful differences, yet are lightweight and scalable. Graph Relative…
In this paper we prove that the Gromov--Hausdorff distance between $\mathbb{R}^n$ and its subset $A$ is finite if and only if $A$ is an $\varepsilon$-net in $\mathbb{R}^n$ for some $\varepsilon>0$. For infinite-dimensional Euclidean spaces…
By a quantum metric space we mean a C^*-algebra (or more generally an order-unit space) equipped with a generalization of the Lipschitz seminorm on functions which is defined by an ordinary metric. We develop for compact quantum metric…
In this work we study the interleaving distance between merge trees from a combinatorial point of view. We use a particular type of matching between trees to obtain a novel formulation of the distance. With such formulation, we tackle the…
This paper is about similarity between objects that can be represented as points in metric measure spaces. A metric measure space is a metric space that is also equipped with a measure. For example, a network with distances between its…
We define, analyze, and give efficient algorithms for two kinds of distance measures for rooted and unrooted phylogenies. For rooted trees, our measures are based on the topologies the input trees induce on triplets; that is, on…
We present two algorithms for computing the geodesic distance between phylogenetic trees in tree space, as introduced by Billera, Holmes, and Vogtmann (2001). We show that the possible combinatorial types of shortest paths between two trees…
Given a pointed metric space $(X,\mathsf{dist}, w)$ on $n$ points, its Gromov's approximating tree is a 0-hyperbolic pseudo-metric space $(X,\mathsf{dist}_T)$ such that $\mathsf{dist}(x,w)=\mathsf{dist}_T(x,w)$ and $\mathsf{dist}(x, y)-2…
We introduce the tree distance, a new distance measure on graphs. The tree distance can be computed in polynomial time with standard methods from convex optimization. It is based on the notion of fractional isomorphism, a characterization…
The Gromov-Wasserstein (GW) distance is a powerful tool for comparing metric measure spaces which has found broad applications in data science and machine learning. Driven by the need to analyze datasets whose objects have increasingly…
We prove that the Gromov-Hausdorff distance from the circle with its geodesic metric to any simply connected geodesic space is never smaller than $\frac{\pi}{4}$. We also prove that this bound is tight through the construction of a simply…
We design a 3/2 approximation algorithm for the Generalized Steiner Tree problem (GST) in metrics with distances 1 and 2. This is the first polynomial time approximation algorithm for a wide class of non-geometric metric GST instances with…