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Commonly studied cellular automata are memoryless and have fixed topology of connections between cells. However by allowing updates of links and short-term memory in cells we may potentially discover novel complex regimes of spatio-temporal…

Cellular Automata and Lattice Gases · Physics 2012-12-13 Ramon Alonso-Sanz , Andrew Adamatzky

Many biological systems can sense periodical variations in a stimulus input and produce well-timed, anticipatory responses after the input is removed. Such systems show memory effects for retaining timing information in the stimulus and…

Neurons and Cognition · Quantitative Biology 2015-09-09 Ying-Jen Yang , Chun-Chung Chen , Pik-Yin Lai , C. K. Chan

A single neuron is known to generate almost identical spike trains when the same fluctuating input is repeatedly applied. Here, we study the reliability of spike firing in a pulse-coupled network of oscillator neurons receiving fluctuating…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 Jun-nosuke Teramae , Tomoki Fukai

Autophagy is a conserved biological stress response in mammalian cells that is responsible for clearing damaged proteins and organelles from the cytoplasm and recycling their contents via the lysosomal pathway. In cases of mild stress,…

Molecular Networks · Quantitative Biology 2015-05-11 I. Tavassoly , J. Parmar , A. N. Shajahan-Haq , R. Clarke , W. T. Baumann , J. J. Tyson

Neuronal spikes directly drive muscles and endow animals with agile movements, but applying the spike-based control signals to actuators in artificial sensor-motor systems inevitably causes a collapse of learning. We developed a system that…

Neurons and Cognition · Quantitative Biology 2026-03-03 Takeshi Kobayashi , Shogo Yonekura , Yasuo Kuniyoshi

The basic units in our brain are neurons and each neuron has more than 1000 synapse connections. Synapse is the basic structure for information transfer in an ever-changing manner, and short-term plasticity allows synapses to perform…

Materials Science · Physics 2014-03-05 Li Qiang Zhu , Chang Jin Wan , Li Qiang Guo , Yi Shi , Qing Wan

Understanding how the brain learns to compute functions reliably, efficiently and robustly with noisy spiking activity is a fundamental challenge in neuroscience. Most sensory and motor tasks can be described as dynamical systems and could…

Neurons and Cognition · Quantitative Biology 2017-05-24 Sophie Denève , Alireza Alemi , Ralph Bourdoukan

Author summary: Synchronization of neuronal spiking in the brain is related to cognitive functions, such as perception, attention, and memory. It is therefore important to determine which properties of neurons influence their collective…

Neurons and Cognition · Quantitative Biology 2013-11-06 Josef Ladenbauer , Moritz Augustin , LieJune Shiau , Klaus Obermayer

How neurons process their inputs crucially determines the dynamics of biological and artificial neural networks. In such neural and neural-like systems, synaptic input is typically considered to be merely transmitted linearly or sublinearly…

Biological Physics · Physics 2017-06-01 David Breuer , Marc Timme , Raoul-Martin Memmesheimer

We study the collective dynamics of an ensemble of coupled identical FitzHugh--Nagumo elements in their excitable regime. We show that collective firing, where all the elements perform their individual firing cycle synchronously, can be…

Statistical Mechanics · Physics 2015-06-05 Claudio J. Tessone , Damián H. Zanette

Several experiments and models have highlighted the importance of neuronal heterogeneity in brain dynamics and function. However, how such a cell-to-cell diversity can affect cortical computation, synchronization, and neuronal communication…

Neurons and Cognition · Quantitative Biology 2021-04-07 Katiele V. P. Brito , Fernanda Selingardi Matias

The computation performed by a neuron can be formulated as a combination of dimensional reduction in stimulus space and the nonlinearity inherent in a spiking output. White noise stimulus and reverse correlation (the spike-triggered average…

Biological Physics · Physics 2007-05-23 Blaise Aguera y Arcas , Adrienne Fairhall

Apoptosis is a mechanism of programmed cell death in which cells engage in a controlled demolition and prepare to be digested without damaging their environment. In normal conditions apoptosis is repressed, until it is irreversibly induced…

Molecular Networks · Quantitative Biology 2021-05-18 Sol M. Fernández Arancibia , Hernán E. Grecco , Luis G. Morelli

In an all-to-all network of integrate-fire oscillators in which there is a disorder in the intrinsic firing rates of the neurons, we show that through spike timing-dependent plasticity the links which have the faster oscillators as…

Neurons and Cognition · Quantitative Biology 2012-01-25 Mehdi Bayati , Alireza Valizadeh

Does synchronization between action potentials from different neurons in the visual system play a substantial role in solving the binding problem? The binding problem can be studied quantitatively in the broader framework of the information…

Biological Physics · Physics 2007-05-23 Simon R. Schultz , Huw D. R. Golledge , Stefano Panzeri

A common approach to interpreting spiking activity is based on identifying the firing fields---regions in physical or configuration spaces that elicit responses of neurons. Common examples include hippocampal place cells that fire at…

Neurons and Cognition · Quantitative Biology 2021-08-10 D. Akhtiamov , A. G. Cohn , Y. Dabaghian

Large sparse circuits of spiking neurons exhibit a balanced state of highly irregular activity under a wide range of conditions. It occurs likewise in sparsely connected random networks that receive excitatory external inputs and recurrent…

Neurons and Cognition · Quantitative Biology 2013-08-16 Sven Jahnke , Raoul-Martin Memmesheimer , Marc Timme

Two identical autonomous dynamical systems coupled in a master-slave configuration can exhibit anticipated synchronization (AS) if the slave also receives a delayed negative self-feedback. Recently, AS was shown to occur in systems of…

Neurons and Cognition · Quantitative Biology 2011-09-12 Fernanda S. Matias , Pedro V. Carelli , Claudio R. Mirasso , Mauro Copelli

Self-sustained activity in the brain is observed in the absence of external stimuli and contributes to signal propagation, neural coding, and dynamic stability. It also plays an important role in cognitive processes. In this work, by means…

We present a study on the emergence of a variety of spatio temporal patterns among neurons that are connected in a multiplex framework, with neurons on two layers with different functional couplings. With the Hindmarsh-Rose model for the…

Adaptation and Self-Organizing Systems · Physics 2021-11-29 Umesh Kumar Verma , G. Ambika