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Hilbert space structure is assumed as a valid geometric description for neurodynamics, i.e., for applying any kind of quantum formalism in brain dynamics. The orientation selectivity of the neurons is used as a justification to construct a…

Quantum Physics · Physics 2007-05-23 Sisir Roy , Menas Kafatos

In the mammalian brain, many neuronal ensembles are involved in representing spatial structure of the environment. In particular, there exist cells that encode the animal's location and cells that encode head direction. A number of studies…

Neurons and Cognition · Quantitative Biology 2021-08-10 Y. Dabaghian

This paper introduces a new technique to measure the feature dependency of neural network models. The motivation is to better understand a model by querying whether it is using information from human-understandable features, e.g.,…

Machine Learning · Computer Science 2024-10-10 Yinzhu Jin , Matthew B. Dwyer , P. Thomas Fletcher

Trimming is a core technique in geometric modeling. Unfortunately, the resulting objects do not take the requirements of numerical simulations into account and yield various problems. This paper outlines principal issues of trimmed models…

Graphics · Computer Science 2019-02-05 Benjamin Marussig

Segmentation is often an essential intermediate step in image analysis. A volume segmentation characterizes the underlying volume image in terms of geometric information--segments, faces between segments, curves in which several faces…

Computational Geometry · Computer Science 2010-10-01 Bjoern Andres , Ullrich Koethe , Thorben Kroeger , Fred A. Hamprecht

Previous literature suggests that perceptual similarity is an emergent property shared across deep visual representations. Experiments conducted on a dataset of human-judged image distortions have proven that deep features outperform…

Computer Vision and Pattern Recognition · Computer Science 2023-09-01 Simone Bianco , Luigi Celona , Paolo Napoletano

Improvements in technique in conjunction with an evolution of the theoretical and conceptual approach to neuronal networks provide a new perspective on living neurons in culture. Organization and connectivity are being measured…

Disordered Systems and Neural Networks · Physics 2010-08-02 Jean-Pierre Eckmann , Ofer Feinerman , Leor Gruendlinger , Elisha Moses , Jordi Soriano , Tsvi Tlusty

The analysis of complex networks has revealed patterns of organization in a variety of natural and artificial systems, including neuronal networks of the brain at multiple scales. In this paper, we describe a novel analysis of the…

Neurons and Cognition · Quantitative Biology 2015-06-26 Luciano da F. Costa , Olaf Sporns

Neuromorphology is crucial to identifying neuronal subtypes and understanding learning. It is also implicated in neurological disease. However, standard morphological analysis focuses on macroscopic features such as branching frequency and…

Neurons and Cognition · Quantitative Biology 2022-03-10 Thomas L. Athey , Jacopo Teneggi , Joshua T. Vogelstein , Daniel Tward , Ulrich Mueller , Michael I. Miller

The distinction of chiral and mirror symmetric objects is straightforward from a geometrical point of view. Since the biological as well as the optical activity of molecules strongly depend on their handedness, chirality has recently…

Learning and inferring features that generate sensory input is a task continuously performed by cortex. In recent years, novel algorithms and learning rules have been proposed that allow neural network models to learn such features from…

Neurons and Cognition · Quantitative Biology 2021-04-13 Yasser Roudi , Graham Taylor

This article discusses how the individual morphological properties of basic objects (e.g. neurons, molecules and aggregates), jointly with their particular spatial distribution, can determine the connectivity and dynamics of systems…

Molecular Networks · Quantitative Biology 2007-05-23 Luciano da Fontoura Costa

Neurons in the brain represent information in their collective activity. The fidelity of this neural population code depends on whether and how variability in the response of one neuron is shared with other neurons. Two decades of studies…

Neurons and Cognition · Quantitative Biology 2021-02-02 Rava Azeredo da Silveira , Fred Rieke

Cell fate decisions emerge as a consequence of a complex set of gene regulatory networks. Models of these networks are known to have more parameters than data can determine. Recent work, inspired by Waddington's metaphor of a landscape, has…

Quantitative Methods · Quantitative Biology 2023-05-08 Archishman Raju , Eric D. Siggia

Image data are often composed of two or more geometrically distinct constituents; in galaxy catalogs, for instance, one sees a mixture of pointlike structures (galaxy superclusters) and curvelike structures (filaments). It would be ideal to…

Functional Analysis · Mathematics 2010-04-20 David L. Donoho , Gitta Kutyniok

The purpose of this work is to construct a model for the functional architecture of the primary visual cortex (V1), based on a structure of metric measure space induced by the underlying organization of receptive profiles (RPs) of visual…

Metric Geometry · Mathematics 2019-10-14 Noemi Montobbio , Alessandro Sarti , Giovanna Citti

Many classical geometric inequalities on functionals of convex bodies depend on the dimension of the ambient space. We show that this dimension dependence may often be replaced (totally or partially) by different symmetry measures of the…

Metric Geometry · Mathematics 2014-12-11 René Brandenberg , Stefan König

In cognitive science and AI, a longstanding question is whether machines learn representations that align with those of the human mind. While current models show promise, it remains an open question whether this alignment is superficial or…

Neurons and Cognition · Quantitative Biology 2025-10-27 Craig Sanders , Billy Dickson , Sahaj Singh Maini , Robert Nosofsky , Zoran Tiganj

This paper presents a mathematical framework for analyzing machine learning models through the geometry of their induced partitions. By representing partitions as Riemannian simplicial complexes, we capture not only adjacency relationships…

Machine Learning · Computer Science 2025-08-05 Pawel Gajer , Jacques Ravel

As borders between different regions, lines are an important element of natural images. Already at the level of the mammalian primary visual cortex (V1), neurons respond best to lines of a given orientation. We reduce a set of images to…

Neurons and Cognition · Quantitative Biology 2007-05-23 Ha Youn Lee , Mehran Kardar