Related papers: Extremal Distances for Subtree Transfer Operations…

We observe that a standard transformation between \emph{ordinal} trees (arbitrary rooted trees with ordered children) and binary trees leads to interesting succinct binary tree representations. There are four symmetric versions of these…

The subtrees and BC-subtrees (subtrees where any two leaves are at even distance apart) have been extensively studied in recent years. Such structures, under special constraints on degrees, have applications in many fields. Through an…

Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…

This article presents two novel algorithms for generating random increasing trees. The first algorithm efficiently generates strictly increasing binary trees using an ad hoc method. The second algorithm improves the recursive method for…

Phylogenetic networks are leaf-labelled directed acyclic graphs that are used to describe non-treelike evolutionary histories and are thus a generalization of phylogenetic trees. The hybridization number of a phylogenetic network is the sum…

It is known that the size of the largest common subtree (i.e., the maximum agreement subtree) of two independent random binary trees with $n$ given labeled leaves is of order between $n^{0.366}$ and $n^{1/2}$. We improve the lower bound to…

Rotation distance measures the difference in shape between binary trees of the same size by counting the minimum number of rotations needed to transform one tree to the other. We describe several types of rotation distance where…

Consider laying out a fixed-topology tree of N nodes into external memory with block size B so as to minimize the worst-case number of block memory transfers required to traverse a path from the root to a node of depth D. We prove that the…

We call a pair of vertex-disjoint, induced subtrees of a rooted trees twins if they have the same counts of vertices by out-degrees. The likely maximum size of twins in a uniformly random, rooted Cayley tree of size $n\to\infty$ is studied.…

Rotation distances measure the differences in structure between rooted ordered binary trees. The one-dimensional skeleta of associahedra are rotation graphs, where two vertices representing trees are connected by an edge if they differ by a…

Consider a rooted tree $T$ with leaf-set $[n]$, and with all non-leaf vertices having out-degree $2$, at least. A rooted tree $\mathcal T$ with leaf-set $S\subset [n]$ is induced by $S$ in $T$ if $\mathcal T$ is the lowest common ancestor…

We investigate the complexity of finding a transformation from a given spanning tree in a graph to another given spanning tree in the same graph via a sequence of edge flips. The exchange property of the matroid bases immediately yields…

We give a 2-approximation algorithm for the Maximum Agreement Forest problem on two rooted binary trees. This NP-hard problem has been studied extensively in the past two decades, since it can be used to compute the rooted Subtree…

We study the detection error probability associated with a balanced binary relay tree, where the leaves of the tree correspond to $N$ identical and independent detectors. The root of the tree represents a fusion center that makes the…

Tree-width and path-width are well-known graph parameters. Many NP-hard graph problems allow polynomial-time solutions, when restricted to graphs of bounded tree-width or bounded path-width. In this work, we study the behavior of tree-width…

We study the average height of random trees generated by leaf-centric binary tree sources as introduced by Zhang, Yang and Kieffer. A leaf-centric binary tree source induces for every $n \geq 2$ a probability distribution on the set of…

The subtree prune-and-regraft (SPR) distance metric is a fundamental way of comparing evolutionary trees. It has wide-ranging applications, such as to study lateral genetic transfer, viral recombination, and Markov chain Monte Carlo…

Let T be a weighted tree with n leaves. Let D_{i,j} be the distance between the leaves i and j. Let D_{i,j,k}= (D_{i,j} + D_{j,k} +D_{i,k})/2. We will call such numbers "triple weights" of the tree. In this paper, we give a…

We prove limit theorems for sums of functions of subtrees of binary search trees and random recursive trees. In particular, we give simple new proofs of the fact that the number of fringe trees of size $ k=k_n $ in the binary search tree…

The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…