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Graph neural networks (GNNs) are a powerful architecture for tackling graph learning tasks, yet have been shown to be oblivious to eminent substructures such as cycles. We present TOGL, a novel layer that incorporates global topological…

Machine Learning · Computer Science 2022-03-18 Max Horn , Edward De Brouwer , Michael Moor , Yves Moreau , Bastian Rieck , Karsten Borgwardt

Networked structure emerged from a wide range of fields such as biological systems, World Wide Web and technological infrastructure. A deeply insight into the topological complexity of these networks has been gained. Some works start to pay…

Physics and Society · Physics 2012-02-03 Jiang Xiongfei

Ontologies have been used for the purpose of bringing system and consistency to subject and knowledge areas. We present a criticism of the present mathematical structure of ontologies and indicate that they are not sufficient in their…

Digital Libraries · Computer Science 2015-03-12 Philip Davies , David Newell , Abigail Davies , Damla Karagozlu

We present a form of algebraic reasoning for computational objects which are expressed as graphs. Edges describe the flow of data between primitive operations which are represented by vertices. These graphs have an interface made of…

Logic in Computer Science · Computer Science 2010-07-23 Lucas Dixon , Ross Duncan , Aleks Kissinger

The aim of this survey article is to highlight several notoriously intractable problems about knots and links, as well as to provide a brief discussion of what is known about them.

Geometric Topology · Mathematics 2016-04-14 Marc Lackenby

Graph neural networks (GNNs) have emerged as a powerful tool for graph classification and representation learning. However, GNNs tend to suffer from over-smoothing problems and are vulnerable to graph perturbations. To address these…

Machine Learning · Computer Science 2021-11-01 Yuzhou Chen , Baris Coskunuzer , Yulia R. Gel

Motivic homotopy theory is meant to play the role of algebraic topology, in particular homotopy theory, in the context of algebraic geometry. As proved by Oliver Rondigs and Paul Arne Ostvaer, this theory is closely connected to Voevodsky's…

Algebraic Geometry · Mathematics 2024-01-03 Ahmad Rouintan

Our aim in this paper is to trace some of the surprising and beautiful connections which are beginning to emerge between a number of apparently disparate topics: Knot Theory, Categorical Quantum Mechanics, and Logic and Computation. We…

Quantum Physics · Physics 2009-10-16 Samson Abramsky

We observe that some natural mathematical definitions are lifting properties relative to simplest counterexamples, namely the definitions of surjectivity and injectivity of maps, as well as of being connected, separation axioms $T_0$ and…

History and Overview · Mathematics 2014-08-29 Misha Gavrilovich

We continue work of our earlier paper (Lewitzka and Brunner: Minimally generated abstract logics, Logica Universalis 3(2), 2009), where abstract logics and particularly intuitionistic abstract logics are studied. Abstract logics can be…

Logic in Computer Science · Computer Science 2017-04-04 Andreas B. M. Brunner , Steffen Lewitzka

In this paper, we study a geometric/topological measure of knots and links called the nullification number. The nullification of knots/links is believed to be biologically relevant. For example, in DNA topology, one can intuitively regard…

Geometric Topology · Mathematics 2015-03-17 Yuanan Diao , Claus Ernst , Anthony Montemayor

Neuroscience is undergoing a period of rapid experimental progress and expansion. New mathematical tools, previously unknown in the neuroscience community, are now being used to tackle fundamental questions and analyze emerging data sets.…

Neurons and Cognition · Quantitative Biology 2016-12-28 Carina Curto

Evaluating the quality of reasoning traces from large language models remains understudied, labor-intensive, and unreliable: current practice relies on expert rubrics, manual annotation, and slow pairwise judgments. Automated efforts are…

Artificial Intelligence · Computer Science 2026-05-28 Xue Wen Tan , Nathaniel Tan , Galen Lee , Stanley Kok

As data structures and mathematical objects used for complex systems modeling, hypergraphs sit nicely poised between on the one hand the world of network models, and on the other that of higher-order mathematical abstractions from algebra,…

In recent years, algebraic topology and its modern development, the theory of persistent homology, has shown great potential in graph representation learning. In this paper, based on the mathematics of algebraic topology, we propose a novel…

Machine Learning · Computer Science 2022-06-14 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Chao Chen

The language of graph theory, or network science, has proven to be an exceptional tool for addressing myriad problems in neuroscience. Yet, the use of networks is predicated on a critical simplifying assumption: that the quintessential unit…

Neurons and Cognition · Quantitative Biology 2016-01-14 Chad Giusti , Robert Ghrist , Danielle S. Bassett

This work examines the problem of topology inference over discrete-time nonlinear stochastic networked dynamical systems. The goal is to recover the underlying digraph linking the network agents, from observations of their state-evolution.…

Multiagent Systems · Computer Science 2019-06-24 Augusto Santos , Vincenzo Matta , Ali H. Sayed

The purpose of this paper is to introduce a version of singular homology based on smooth mappings of manifolds with corners. Although variants of such a theory exists in the literature, we felt that certain points were not adequately…

Algebraic Topology · Mathematics 2014-09-04 Max Lipyanskiy

The use of graph neural networks has produced significant advances in point cloud problems, such as those found in high energy physics. The question of how to produce a graph structure in these problems is usually treated as a matter of…

Machine Learning · Computer Science 2023-08-01 Daniel Murnane

This paper is an introduction to the subject of virtual knot theory, combined with a discussion of some specific new theorems about virtual knots. The new results are as follows: We prove, using a 3-dimensional topology approach that if a…

Geometric Topology · Mathematics 2007-05-23 Louis Kauffman , Vassily Olegovich Manturov
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