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Related papers: Knot Logic: Logical Connection and Topological Con…

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In this chapter (Chapter V) we present several results which demonstrate a close connection and useful exchange of ideas between graph theory and knot theory. These disciplines were shown to be related from the time of Tait (if not Listing)…

Geometric Topology · Mathematics 2007-05-23 Jozef H. Przytycki

Exploring the structural topology of genome-based large-scale metabolic network is essential for investigating possible relations between structure and functionality. Visualization would be helpful for obtaining immediate information about…

Molecular Networks · Quantitative Biology 2007-09-06 Zhao Jing , Tao Lin , Yu Hong , Luo Jian-Hua , Z. W. Cao , Li Yixue

The paper has a form of a survey and consists of three parts. It is focused on the relationship between the many-sorted theory, which leads to logical geometry and one-sorted theory, which is based on the important model-theoretic concepts.…

Logic · Mathematics 2014-06-13 Boris Plotkin , Eugene Plotkin

Links and knots are exotic topological structures that have garnered significant interest across multiple branches of natural sciences. Coherent links and knots, such as those constructed by phase or polarization singularities of coherent…

Optics · Physics 2025-04-08 Zhuoyi Wang , Xingyuan Lu , Zhigang Chen , Yangjian Cai , Chengliang Zhao

Machine reading comprehension (MRC) poses new challenges over logical reasoning, which aims to understand the implicit logical relations entailed in the given contexts and perform inference over them. Due to the complexity of logic, logical…

Computation and Language · Computer Science 2023-06-22 Jialin Chen , Zhuosheng Zhang , Hai Zhao

Computational topology is an area that revisits topological problems from an algorithmic point of view, and develops topological tools for improved algorithms. We survey results in computational topology that are concerned with graphs drawn…

Computational Geometry · Computer Science 2017-09-06 Éric Colin de Verdière

The irreducible complexity of natural phenomena has led Graph Neural Networks to be employed as a standard model to perform representation learning tasks on graph-structured data. While their capacity to capture local and global patterns is…

Machine Learning · Computer Science 2024-02-13 Lorenzo Giusti

Scientists use a mathematical subject called 'topology' to study the shapes of objects. An important part of topology is counting the numbers of pieces and holes in objects, and people use this information to group objects into different…

History and Overview · Mathematics 2020-09-10 Michelle Feng , Abigail Hickok , Yacoub H. Kureh , Mason A. Porter , Chad M. Topaz

In this work we consider the topological analysis of symbolic formal systems in the framework of network theory. In particular we analyse the network extracted by Principia Mathematica of B. Russell and A.N. Whitehead, where the vertices…

Physics and Society · Physics 2011-09-09 A. P. Masucci

Complex models, such as neural networks (NNs), are comprised of many interrelated components. In order to represent these models, eliciting and characterising the relations between components is essential. Perhaps because of this, diagrams,…

Human-Computer Interaction · Computer Science 2022-06-13 Guy Clarke Marshall , Caroline Jay , Andre Freitas

Linkages are mechanical devices constructed from rigid bars and freely rotating joints studied both for their utility in engineering and as mathematical idealizations in a number of physical systems. Recently, there has been a resurgence of…

Soft Condensed Matter · Physics 2022-11-23 M. Berry , David Limberg , M. E. Lee-Trimble , Ryan Hayward , C. D. Santangelo

Understanding the uncertainty in large language model (LLM) explanations is important for evaluating their faithfulness and reasoning consistency, and thus provides insights into the reliability of LLM's output regarding a question. In this…

Computation and Language · Computer Science 2025-09-16 Longchao Da , Xiaoou Liu , Jiaxin Dai , Lu Cheng , Yaqing Wang , Hua Wei

The topology of many real complex networks has been conjectured to be embedded in hidden metric spaces, where distances between nodes encode their likelihood of being connected. Besides of providing a natural geometrical interpretation of…

Physics and Society · Physics 2017-01-23 Antoine Allard , M. Ángeles Serrano , Guillermo García-Pérez , Marián Boguñá

There are many examples of dualities between topological spaces and algebras in the literature. Particularly, many of those examples come from the algebraic counterpart of a logical system, e.g, boolean and heyting algebras, MV-algebras,…

Category Theory · Mathematics 2023-11-08 Mayk de Andrade , Hugo Mariano

For many materials, a precise knowledge of their dispersion spectra is insufficient to predict their ordered phases and physical responses. Instead, these materials are classified by the geometrical and topological properties of their…

Materials Science · Physics 2021-06-16 Qiong Ma , Adolfo G. Grushin , Kenneth S. Burch

Physical knots and links are one-dimensional submanifolds of R^3 with fixed length and thickness. We show that isotopy classes in this category can differ from those of classical knot and link theory. In particular we exhibit a Gordian…

Geometric Topology · Mathematics 2016-01-20 Alexander Coward , Joel Hass

We discuss physical systems with topologies more complicated than simple gaussian linking. Our examples of these higher topologies are in non-relativistic quantum mechanics and in QCD.

High Energy Physics - Phenomenology · Physics 2010-10-29 Roman V. Buniy , Martha J. Holmes , Thomas W. Kephart

Cut-diagrams are diagrammatic objects, defined in dimensions 1 and 2, that generalize links in 3-space and surface-links in 4-space; in dimension 1, this coincides with the theory of welded links. Using cut-diagrams, we introduce an…

Geometric Topology · Mathematics 2026-03-30 Benjamin Audoux , Jean-Baptiste Meilhan , Akira Yasuhara

Simplicial complexes capture the underlying network topology and geometry of complex systems ranging from the brain to social networks. Here we show that algebraic topology is a fundamental tool to capture the higher-order dynamics of…

Disordered Systems and Neural Networks · Physics 2021-07-12 Reza Ghorbanchian , Juan G. Restrepo , Joaquín J. Torres , Ginestra Bianconi

Graph neural networks are prominent models for representation learning over graph-structured data. While the capabilities and limitations of these models are well-understood for simple graphs, our understanding remains incomplete in the…

Machine Learning · Computer Science 2023-10-27 Xingyue Huang , Miguel Romero Orth , İsmail İlkan Ceylan , Pablo Barceló