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In the group testing problem, the goal is to identify a subset of defective items within a larger set of items based on tests whose outcomes indicate whether any defective item is present. This problem is relevant in areas such as medical…

Information Theory · Computer Science 2022-09-28 Nelvin Tan , Way Tan , Jonathan Scarlett

We propose a novel group testing method, termed semi-quantitative group testing, motivated by a class of problems arising in genome screening experiments. Semi-quantitative group testing (SQGT) is a (possibly) non-binary pooling scheme that…

Information Theory · Computer Science 2015-05-28 Amin Emad , Olgica Milenkovic

Group testing is a well-known search problem that consists in detecting of $s$ defective members of a set of $t$ samples by carrying out tests on properly chosen subsets of samples. In classical group testing the goal is to find all…

Information Theory · Computer Science 2019-05-01 Ilya Vorobyev

We consider the nonadaptive group testing with N items, of which $K = \Theta(N^\theta)$ are defective. We study a test design in which each item appears in nearly the same number of tests. For each item, we independently pick L tests…

Information Theory · Computer Science 2018-09-26 Oliver Johnson , Matthew Aldridge , Jonathan Scarlett

Non-adaptive group testing involves grouping arbitrary subsets of $n$ items into different pools. Each pool is then tested and defective items are identified. A fundamental question involves minimizing the number of pools required to…

Discrete Mathematics · Computer Science 2011-07-26 Mahdi Cheraghchi , Amin Karbasi , Soheil Mohajer , Venkatesh Saligrama

The goal of the group testing problem is to identify a set of defective items within a larger set of items, using suitably-designed tests whose outcomes indicate whether any defective item is present. In this paper, we study how the number…

Information Theory · Computer Science 2023-01-18 Ivan Lau , Jonathan Scarlett , Yang Sun

We study the group testing problem where the goal is to identify a set of k infected individuals carrying a rare disease within a population of size n, based on the outcomes of pooled tests which return positive whenever there is at least…

Machine Learning · Statistics 2022-06-16 Amin Coja-Oghlan , Oliver Gebhard , Max Hahn-Klimroth , Alexander S. Wein , Ilias Zadik

The task of non-adaptive group testing is to identify up to $d$ defective items from $N$ items, where a test is positive if it contains at least one defective item, and negative otherwise. If there are $t$ tests, they can be represented as…

Information Theory · Computer Science 2020-01-07 Thach V. Bui , Minoru Kuribayashi , Tetsuya Kojima , Roghayyeh Haghvirdinezhad , Isao Echizen

We formulate and analyze a stochastic threshold group testing problem motivated by biological applications. Here a set of $n$ items contains a subset of $d \ll n$ defective items. Subsets (pools) of the $n$ items are tested -- the test…

Information Theory · Computer Science 2013-04-25 Chun Lam Chan , Sheng Cai , Mayank Bakshi , Sidharth Jaggi , Venkatesh Saligrama

Construction of error-correcting codes achieving a designated minimum distance parameter is a central problem in coding theory. In this work, we study a very simple construction of binary linear codes that correct a given number of errors…

Information Theory · Computer Science 2022-12-13 Mahdi Cheraghchi , João Ribeiro

The group testing problem consists of determining a small set of defective items from a larger set of items based on tests on groups of items, and is relevant in applications such as medical testing, communication protocols, pattern…

Information Theory · Computer Science 2020-01-27 Steffen Bondorf , Binbin Chen , Jonathan Scarlett , Haifeng Yu , Yuda Zhao

In the group-testing literature, efficient algorithms have been developed to minimize the number of tests required to identify all minimal "defective" sub-groups embedded within a larger group, using deterministic group splitting with a…

Discrete Mathematics · Computer Science 2020-10-20 Laurence A. Clarfeld , Margaret J. Eppstein

Given $d$ defective items in a population of $n$ items with $d \ll n$, in threshold group testing without gap, the outcome of a test on a subset of items is positive if the subset has at least $u$ defective items and negative otherwise,…

Information Theory · Computer Science 2024-05-10 Thach V. Bui , Yeow Meng Chee , Van Khu Vu

In group testing, the task is to identify defective items by testing groups of them together using as few tests as possible. We consider the setting where each item is defective with a constant probability $\alpha$, independent of all other…

Discrete Mathematics · Computer Science 2024-11-15 Lukas Hintze , Lena Krieg , Olga Scheftelowitsch , Haodong Zhu

In the online false discovery rate (FDR) problem, one observes a possibly infinite sequence of $p$-values $P_1,P_2,\dots$, each testing a different null hypothesis, and an algorithm must pick a sequence of rejection thresholds…

Methodology · Statistics 2019-07-12 Aaditya Ramdas , Tijana Zrnic , Martin Wainwright , Michael Jordan

The goal of combinatorial group testing is to efficiently identify up to $d$ defective items in a large population of $n$ items, where $d \ll n$. Defective items satisfy certain properties while the remaining items in the population do not.…

Information Theory · Computer Science 2019-04-02 Thach V. Bui , Minoru Kuribayashi , Mahdi Cheraghchi , Isao Echizen

We consider the problem of non-adaptive noiseless group testing of $N$ items of which $K$ are defective. We describe four detection algorithms: the COMP algorithm of Chan et al.; two new algorithms, DD and SCOMP, which require stronger…

Information Theory · Computer Science 2014-05-20 Matthew Aldridge , Leonardo Baldassini , Oliver Johnson

The problem of approximately computing the $k$ dominant Fourier coefficients of a vector $X$ quickly, and using few samples in time domain, is known as the Sparse Fourier Transform (sparse FFT) problem. A long line of work on the sparse FFT…

Data Structures and Algorithms · Computer Science 2017-04-12 Volkan Cevher , Michael Kapralov , Jonathan Scarlett , Amir Zandieh

We consider the problem of recovering a $K$-sparse complex signal $x$ from $m$ intensity measurements. We propose the PhaseCode algorithm, and show that in the noiseless case, PhaseCode can recover an arbitrarily-close-to-one fraction of…

Information Theory · Computer Science 2017-04-03 Ramtin Pedarsani , Dong Yin , Kangwook Lee , Kannan Ramchandran

Group testing is an approach aimed at identifying up to $d$ defective items among a total of $n$ elements. This is accomplished by examining subsets to determine if at least one defective item is present. In our study, we focus on the…

Data Structures and Algorithms · Computer Science 2023-07-12 Nader H. Bshouty , Catherine A. Haddad-Zaknoon