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Peptide Optimization is a highly complex problem and it takes very long time of computation. This optimization process uses many software applications in a cluster running GNU/Linux Operating System that perform special tasks. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-12-05 Andias Wira-Alam

Recurrent Neural Networks (RNNs) are vital for sequential data processing. Long Short-Term Memory Autoencoders (LSTM-AEs) are particularly effective for unsupervised anomaly detection in time-series data. However, inherent sequential…

Hardware Architecture · Computer Science 2026-03-17 Aimilios Leftheriotis , Dimosthenis Masouros , Dimitrios Soudris , George Theodoridis

Joint ptychography and tomography (JPT) is a recently developed framework that enables high-resolution reconstruction of 3D volumes with significantly relaxed constraints on probe overlap at adjacent scan positions. In ptychographic X-ray…

Image and Video Processing · Electrical Eng. & Systems 2020-02-20 Azat M. Slyamov , Viktor Nikitin , Doğa Gürsoy , Rajmund Mokso , Jens W. Andreasen

The aim of the paper is to introduce general techniques in order to optimize the parallel execution time of sorting on a distributed architectures with processors of various speeds. Such an application requires a partitioning step. For…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-08-16 Christophe Cérin , Jean-Christophe Dubacq , Jean-Louis Roch , the SafeScale Collaboration

Large-scale HPC simulations of plasma dynamics in fusion devices require efficient parallel I/O to avoid slowing down the simulation and to enable the post-processing of critical information. Such complex simulations lacking parallel I/O…

In robotics, structural design and behavior optimization have long been considered separate processes, resulting in the development of systems with limited capabilities. Recently, co-design methods have gained popularity, where bi-level…

Robotics · Computer Science 2025-07-02 Rohit Kumar , Melya Boukheddimi , Dennis Mronga , Shivesh Kumar , Frank Kirchner

Many technologies have been developed to help improve spatial resolution of observational images for ground-based solar telescopes, such as adaptive optics (AO) systems and post-processing reconstruction. As any AO system correction is only…

Instrumentation and Methods for Astrophysics · Physics 2017-01-04 Xue-bao Li , Zhong Liu , Feng Wang , Zhen-yu Jin , Yong-yuan Xiang , Yan-fang Zheng

Multi-task learning is increasingly used to investigate the association structure between multiple responses and a single set of predictor variables in many applications. In the era of big data, the coexistence of incomplete outcomes, large…

Methodology · Statistics 2021-04-13 Ruipeng Dong , Daoji Li , Zemin Zheng

We describe source code level parallelization for the {\tt kira} direct gravitational $N$-body integrator, the workhorse of the {\tt starlab} production environment for simulating dense stellar systems. The parallelization strategy, called…

The convex hull is a fundamental geometrical structure for many applications where groups of points must be enclosed or represented by a convex polygon. Although efficient sequential convex hull algorithms exist, and are constantly being…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-27 Alan Keith , Héctor Ferrada , Cristóbal A. Navarro

The matrix element method utilizes ab initio calculations of probability densities as powerful discriminants for processes of interest in experimental particle physics. The method has already been used successfully at previous and current…

Computational Physics · Physics 2015-05-20 Doug Schouten , Adam DeAbreu , Bernd Stelzer

The sheer sizes of modern datasets are forcing data-structure designers to consider seriously both parallel construction and compactness. To achieve those goals we need to design a parallel algorithm with good scalability and with low…

Data Structures and Algorithms · Computer Science 2017-05-02 Leo Ferres , José Fuentes-Sepúlveda , Travis Gagie , Meng He , Gonzalo Navarro

Reconstruction of PET images is an ill-posed inverse problem and often requires iterative algorithms to achieve good image quality for reliable clinical use in practice, at huge computational costs. In this paper, we consider the PET…

Computer Vision and Pattern Recognition · Computer Science 2017-04-25 Jieqing Jiao , Sebastien Ourselin

Jet flavour identification algorithms are of paramount importance to maximise the physics potential of future collider experiments. This work describes a novel set of tools allowing for a realistic simulation and reconstruction of particle…

High Energy Physics - Experiment · Physics 2022-08-10 Franco Bedeschi , Loukas Gouskos , Michele Selvaggi

The characterization of a unitary gate is experimentally accomplished via Quantum Process Tomography, which combines the outcomes of different projective measurements to reconstruct the underlying operator. The process matrix is typically…

Quantum Physics · Physics 2025-09-17 Tareq Jaouni , Francesco Di Colandrea , Lorenzo Amato , Filippo Cardano , Ebrahim Karimi

Artificial intelligence (AI) is entering medical imaging, mainly enhancing image reconstruction. Nevertheless, improvements throughout the entire processing, from signal detection to computation, potentially offer significant benefits. This…

Machine Learning · Computer Science 2023-10-27 Stephan Naunheim , Yannick Kuhl , David Schug , Volkmar Schulz , Florian Mueller

Timing-pick up detectors with excellent timing resolutions are essential in many modern nuclear physics experiments. Aiming to develop a Time-Of-Flight system with precision down to about 10 ps, we have made a systematic study of the timing…

Instrumentation and Detectors · Physics 2016-04-19 J. W. Zhao , B. H. Sun , I. Tanihata , S. Terashima , L. H. Zhu , A. Enomoto , D. Nagae , T. Nishimura , S. Omika , A. Ozawa , Y. Takeuchi , T. Yamaguchi

Positron Emission Tomography (PET) is an important molecular imaging tool widely used in medicine. Traditional PET systems rely on complete detector rings for full angular coverage and reliable data collection. However, incomplete-ring PET…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Yeqi Fang , Rong Zhou

The computational inefficiency of spiking neural networks (SNNs) is primarily due to the sequential updates of membrane potential, which becomes more pronounced during extended encoding periods compared to artificial neural networks (ANNs).…

Computer Vision and Pattern Recognition · Computer Science 2024-12-31 Hanqi Chen , Lixing Yu , Shaojie Zhan , Penghui Yao , Jiankun Shao

The Kernel Polynomial Method (KPM) is one of the fast diagonalization methods used for simulations of quantum systems in research fields of condensed matter physics and chemistry. The algorithm has a difficulty to be parallelized on a…

Computational Physics · Physics 2011-05-30 Shixun Zhang , Shinichi Yamagiwa , Masahiko Okumura , Seiji Yunoki