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We use the term protocol coding to denote the communication strategies in which information is encoded through the actions taken by a certain communication protocol. In this work we investigate strategies for protocol coding via…

Information Theory · Computer Science 2012-02-03 Petar Popovski , Zoran Utkovski , Kasper F. Trillingsgaard

In this paper, a cooperative diffusion-based molecular communication system is considered where distributed receivers collaboratively determine a transmitter's signal. In this system, the receivers first make local hard decisions about the…

Information Theory · Computer Science 2017-03-20 Yuting Fang , Adam Noel , Nan Yang , Andrew W. Eckford , Rodney A. Kennedy

Starting from first principles of wave propagation, we consider a multiple-input multiple-output (MIMO) representation of a communication system between two spatially-continuous volumes. This is the concept of holographic MIMO…

Signal Processing · Electrical Eng. & Systems 2022-09-30 Luca Sanguinetti , Antonio A. D'Amico , Merouane Debbah

In a diffusion-based molecular communication network, transmitters and receivers communicate by using signalling molecules (or ligands) in a fluid medium. This paper assumes that the transmitter uses different chemical reactions to generate…

Information Theory · Computer Science 2019-04-25 Chun Tung Chou

Molecular Relational Learning (MRL) aims to understand interactions between molecular pairs, playing a critical role in advancing biochemical research. With the recent development of large language models (LLMs), a growing number of studies…

Machine Learning · Computer Science 2025-06-03 Zhuo Chen , Yizhen Zheng , Huan Yee Koh , Hongxin Xiang , Linjiang Chen , Wenjie Du , Yang Wang

Molecular Communication (MC) is an important nanoscale communication paradigm, which is employed for the interconnection of the nanomachines (NMs) to form nanonetworks. A transmitter NM (TN) sends the information symbols by emitting…

Signal Processing · Electrical Eng. & Systems 2020-03-27 Baris Atakan , Fatih Gulec

Theoretical concepts in condensed matter physics are typically verified and also developed by exploiting computer simulations mostly in simple models. Predictions based on these usually isotropic models are often at odds with measurement…

Soft Condensed Matter · Physics 2020-11-13 K. Koperwas , A. Grzybowski , M. Paluch

Molecular communication (MC) is an emerging paradigm that takes inspiration from biological processes, enabling communication at the nanoscale and facilitating the development of the Internet of Bio-Nano Things (IoBNT). Traditional models…

Emerging Technologies · Computer Science 2025-01-22 Shaojie Zhang , Ozgur B. Akan

This thesis presents a new methodology to analyze one-dimensional signals trough a new approach called Multi Layer Analysis, for short MLA. It also provides some new insights on the relationship between one-dimensional signals processed by…

Computer Vision and Pattern Recognition · Computer Science 2011-07-28 Luca Pinello

This paper focuses on molecular communication (MC) systems where the signaling molecules may participate in a reversible bimolecular reaction in the channel. The motivation for studying these MC systems is that they can realize the concept…

Information Theory · Computer Science 2017-11-02 Vahid Jamali , Nariman Farsad , Robert Schober , Andrea Goldsmith

Molecular communication is an emerging paradigm for systems that rely on the release of molecules as information carriers. Communication via molecular diffusion is a popular strategy that is ubiquitous in nature and very fast over distances…

Emerging Technologies · Computer Science 2016-09-13 Adam Noel , Dimitrios Makrakis , Abdelhakim Hafid

Active transport such as fluid flow is sought in molecular communication to extend coverage, improve reliability, and mitigate interference. Flow models are often over-simplified, assuming one-dimensional diffusion with constant drift.…

Emerging Technologies · Computer Science 2024-10-30 Wayan Wicke , Tobias Schwering , Arman Ahmadzadeh , Vahid Jamali , Adam Noel , Robert Schober

Molecular communication (MC) studies biological signals that are found in nature. Most MC literature focuses on particle properties, even though many natural phenomena exhibit wave-like behavior. One such signal is sound waves.…

Signal Processing · Electrical Eng. & Systems 2025-12-02 Fatih Merdan , Ozgur B. Akan

Precise channel state knowledge is crucial in future wireless communication systems, which drives the need for accurate channel prediction without additional pilot overhead. While machine-learning (ML) methods for channel prediction show…

Information Theory · Computer Science 2025-02-26 Hwanjin Kim , Junil Choi , David J. Love

Molecular communication is not only able to mimic biological and chemical communication mechanisms, but also provides a theoretical framework for viral infection processes. In this tutorial, aerosol and droplet transmission is modeled as a…

Signal Processing · Electrical Eng. & Systems 2022-01-19 Max Schurwanz , Peter Adam Hoeher , Sunasheer Bhattacharjee , Martin Damrath , Lukas Stratmann , Falko Dressler

Machine learning (ML) is transforming all areas of science. The complex and time-consuming calculations in molecular simulations are particularly suitable for a machine learning revolution and have already been profoundly impacted by the…

Chemical Physics · Physics 2019-11-11 Frank Noé , Alexandre Tkatchenko , Klaus-Robert Müller , Cecilia Clementi

The ubiquity of information transmission via molecular communication between cells is comprehensively documented on Earth; this phenomenon might even have played a vital role in the origin(s) and early evolution of life. Motivated by these…

Earth and Planetary Astrophysics · Physics 2024-01-26 Manasvi Lingam

Molecular Communication (MC) is a bio-inspired communication paradigm utilizing molecules for information transfer. Research on this unconventional communication technique has recently started to transition from theoretical investigations…

Emerging Technologies · Computer Science 2023-07-11 Ali Abdali , Murat Kuscu

The motion of molecules across channels is critically important for understanding mechanisms of cellular processes. Here we investigate the mechanism of interactions in the molecular transport by analyzing exactly solvable discrete…

Soft Condensed Matter · Physics 2015-05-18 Anatoly B. Kolomeisky , Karthik Uppulury

Electrical engineering and molecular programming share many of the same mathematical foundations. In this paper, we show how to send multiple signals through a single pair of chemical species using modulation and demodulation techniques…

Emerging Technologies · Computer Science 2020-09-16 Titus H. Klinge , James I. Lathrop