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Chemical reaction networks (CRNs) model the behavior of chemical reactions in well-mixed solutions and they can be designed to perform computations. In this tutorial we give an overview of various computational models for CRNs. Moreover, we…

Emerging Technologies · Computer Science 2018-11-27 Robert Brijder

Query optimization is critical in relational databases. Recently, numerous Learned Query Optimizers (LQOs) have been proposed, demonstrating superior performance over traditional hand-crafted query optimizers after short training periods.…

Databases · Computer Science 2025-05-06 Hanwen Liu , Shashank Giridhara , Ibrahim Sabek

In this work, we design a type of controller that consists of adding a specific set of reactions to an existing mass-action chemical reaction network in order to control a target species. This set of reactions is effective for both…

Molecular Networks · Quantitative Biology 2020-07-27 Jinsu Kim , German Enciso

We introduce Recursive Agent Optimization (RAO), a reinforcement learning approach for training recursive agents: agents that can spawn and delegate sub-tasks to new instantiations of themselves recursively. Recursive agents implement an…

Machine Learning · Computer Science 2026-05-08 Apurva Gandhi , Satyaki Chakraborty , Xiangjun Wang , Aviral Kumar , Graham Neubig

Model-based process simulation can be used to derive designs and operating conditions of chemical processes that optimally balance multiple objectives, such as quality, costs, or environmental impacts. This work focuses on identifying…

In this paper, we present NEMO, a system that translates Natural-language descriptions of decision problems into formal Executable Mathematical Optimization implementations, operating collaboratively with users or autonomously. Existing…

Artificial Intelligence · Computer Science 2026-01-30 Yang Song , Anoushka Vyas , Zirui Wei , Sina Khoshfetrat Pakazad , Henrik Ohlsson , Graham Neubig

In this work we are interested in stochastic particle methods for multi-objective optimization. The problem is formulated using parametrized, single-objective sub-problems which are solved simultaneously. To this end a consensus based…

Optimization and Control · Mathematics 2022-08-03 Giacomo Borghi , Michael Herty , Lorenzo Pareschi

The Chemical Reaction Network (CRN) is a well-studied model that describes the interaction of molecules in well-mixed solutions. In 2014, Qian and Winfree [22] proposed the abstract surface chemical reaction network model (sCRN), which…

Computational Complexity · Computer Science 2024-06-14 Yi-Xuan Lee , Ho-Lin Chen

Recently, a very simple new bilateral negotiation strategy called MiCRO was introduced that does not make use of any kind of opponent modeling or machine learning techniques and that does not require fine-tuning of any parameters. Despite…

Multiagent Systems · Computer Science 2025-10-21 David Aguilera-Luzon , Dave de Jonge , Javier Larrosa

While traditional distributionally robust optimization (DRO) aims to minimize the maximal risk over a set of distributions, Agarwal and Zhang (2022) recently proposed a variant that replaces risk with excess risk. Compared to DRO, the new…

Optimization and Control · Mathematics 2024-05-29 Lijun Zhang , Haomin Bai , Wei-Wei Tu , Ping Yang , Yao Hu

Analysis of large continuous-time stochastic systems is a computationally intensive task. In this work we focus on population models arising from chemical reaction networks (CRNs), which play a fundamental role in analysis and design of…

Systems and Control · Computer Science 2019-05-27 Milan Češka , Jan Křetínský

Due to the intrinsic complexity and nonlinearity of chemical reactions, direct applications of traditional machine learning algorithms may face with many difficulties. In this study, through two concrete examples with biological background,…

Molecular Networks · Quantitative Biology 2020-06-02 Wuyue Yang , Liangrong Peng , Yi Zhu , Liu Hong

Covariate-adjusted response-adaptive (CARA) designs have gained widespread adoption for their clear benefits in enhancing experimental efficiency and participant welfare. These designs dynamically adjust treatment allocations during interim…

Methodology · Statistics 2025-12-10 Xinwei Ma , Jingshen Wang , Waverly Wei

Modern scientific and engineering design increasingly involves distributed optimization, where agents such as laboratories, simulations, or industrial partners pursue related goals under differing conditions. These agents often face…

Machine Learning · Statistics 2025-10-21 Zihan Wang , Yi-Ping Chen , Tuba Dolar , Wei Chen

Online Feedback Optimization leverages properties of optimization algorithms to develop controllers for systems with limited model availability, which is often the case in process control. The interplay between the parameters of the chosen…

Systems and Control · Electrical Eng. & Systems 2026-04-15 Marta Zagorowska , Lukas Ortmann , Giuseppe Belgioioso , Lars Imsland

Consensus-based optimization (CBO) is a versatile multi-particle optimization method for performing nonconvex and nonsmooth global optimizations in high dimensions. Proofs of global convergence in probability have been achieved for a broad…

Optimization and Control · Mathematics 2026-01-13 Jonas Beddrich , Enis Chenchene , Massimo Fornasier , Hui Huang , Barbara Wohlmuth

This article proposes the Ecological Cycle Optimizer (ECO), a novel metaheuristic algorithm inspired by energy flow and material cycling in ecosystems. ECO draws an analogy between the dynamic process of solving optimization problems and…

Neural and Evolutionary Computing · Computer Science 2025-08-29 Boyu Ma , Jiaxiao Shi , Yiming Ji , Zhengpu Wang

Parameter fitting of data to a proposed equation almost always consider these parameters as independent variables. Here, the method proposed optimizes an arbitrary number of variables by the minimization of a function of a single variable.…

Chemical Physics · Physics 2010-06-15 Christopher G. Jesudason

Automated process control systems (APCS) are widely used in modern industrial enterprises. They address three key objectives: ensuring the required quality of manufactured products, ensuring process safety for people and the environment,…

Systems and Control · Electrical Eng. & Systems 2026-03-18 Ruslan Zakirzyanov

Finding the optimal solution is often the primary goal in combinatorial optimization (CO). However, real-world applications frequently require diverse solutions rather than a single optimum, particularly in two key scenarios. The first…

Machine Learning · Statistics 2025-08-15 Yuma Ichikawa , Hiroaki Iwashita
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