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Large-scale neuroscience is generating rich datasets across animals, brain areas and behavioral contexts, yet our modeling efforts remains fragmented across isolated experiments. We argue that understanding behavior requires integrative…

The neural ordinary differential equation (neural ODE) model has attracted increasing attention in time series analysis for its capability to process irregular time steps, i.e., data are not observed over equally-spaced time intervals. In…

Machine Learning · Computer Science 2021-07-23 Mingyuan Bai , S. T. Boris Choy , Junping Zhang , Junbin Gao

In this brief paper, a learning algorithm is developed for Deep Learning NeuroSkin Neural Network to improve their learning properties. Neuroskin is a new type of neural network presented recently by the authors. It is comprised of a…

Neural and Evolutionary Computing · Computer Science 2023-02-06 Mehrdad Shafiei Dizaji

By interpreting the forward dynamics of the latent representation of neural networks as an ordinary differential equation, Neural Ordinary Differential Equation (Neural ODE) emerged as an effective framework for modeling a system dynamics…

Machine Learning · Computer Science 2020-10-19 Daehoon Gwak , Gyuhyeon Sim , Michael Poli , Stefano Massaroli , Jaegul Choo , Edward Choi

Simultaneous deterministic and weakly stochastic dynamics of multiple populations described by a large system of ODE's is considered in the phase space of population sizes and ODE's parameters. We show that many practically interesting…

Dynamical Systems · Mathematics 2025-08-28 Neil V. Budko , Fred J. Vermolen

Neural networks and other machine learning models compute continuous representations, while humans communicate mostly through discrete symbols. Reconciling these two forms of communication is desirable for generating human-readable…

Machine Learning · Computer Science 2022-02-14 António Farinhas , Wilker Aziz , Vlad Niculae , André F. T. Martins

In this paper we consider the limiting case of neural networks (NNs) architectures when the number of neurons in each hidden layer and the number of hidden layers tend to infinity thus forming a continuum, and we derive approximation errors…

Machine Learning · Computer Science 2026-05-12 Christophe Prieur , Mircea Lazar , Bogdan Robu

In this paper we deal with pedestrian modeling, aiming at simulating crowd behavior in normal and emergency scenarios, including highly congested mass events. We are specifically concerned with a new agent-based, continuous-in-space,…

Adaptation and Self-Organizing Systems · Physics 2023-11-23 E. Cristiani , M. Menci , A. Malagnino , G. G. Amaro

Learning dynamical systems is a promising avenue for scientific discoveries. However, capturing the governing dynamics in multiple environments still remains a challenge: model-based approaches rely on the fidelity of assumptions made for a…

Machine Learning · Computer Science 2023-03-09 MoonJeong Park , Youngbin Choi , Namhoon Lee , Dongwoo Kim

Complex network states are characterized by the interplay between system's structure and dynamics. One way to represent such states is by means of network density matrices, whose von Neumann entropy characterizes the number of distinct…

Physics and Society · Physics 2022-12-06 Arsham Ghavasieh , Manlio De Domenico

We consider an idealized network, formed by N neurons individually described by the FitzHugh-Nagumo equations and connected by electrical synapses. The limit for N to infinity of the resulting discrete model is thoroughly investigated, with…

Neurons and Cognition · Quantitative Biology 2013-07-11 Claudio Canuto , Anna Cattani

There has been a significant focus on modelling emotion ambiguity in recent years, with advancements made in representing emotions as distributions to capture ambiguity. However, there has been comparatively less effort devoted to the…

Artificial Intelligence · Computer Science 2024-08-01 Jingyao Wu , Ting Dang , Vidhyasaharan Sethu , Eliathamby Ambikairajah

Deep sequence models have achieved notable success in time-series analysis, such as interpolation and forecasting. Recent advances move beyond discrete-time architectures like Recurrent Neural Networks (RNNs) toward continuous-time…

Machine Learning · Computer Science 2025-08-05 Haoran Li , Muhao Guo , Yang Weng , Hanghang Tong

The simplest model of a smart spatial redistribution of individuals is proposed. A single-species population is considered, to be composed of two discrete subpopulations inhabiting two stations; migration is a transfer between them. The…

Populations and Evolution · Quantitative Biology 2016-09-08 Michael Sadovsky

Mathematical models are vital interpretive and predictive tools used to assist in the understanding of cell migration. There are typically two approaches to modelling cell migration: either micro-scale, discrete or macro-scale, continuum.…

Cell Behavior · Quantitative Biology 2018-08-16 Enrico Gavagnin , Christian A. Yates

Efficient neural network models that generate brain-like dynamic activity can be a valuable resource for generating synthetic data, analyzing differences in brain transients under conditions such as testing perturbation activity or…

We consider the compilation of a binary neural network's decision function into tractable representations such as Ordered Binary Decision Diagrams (OBDDs) and Sentential Decision Diagrams (SDDs). Obtaining this function as an OBDD/SDD…

Machine Learning · Computer Science 2020-07-06 Weijia Shi , Andy Shih , Adnan Darwiche , Arthur Choi

We present a new microscopic ODE-based model for pedestrian dynamics: the Gradient Navigation Model. The model uses a superposition of gradients of distance functions to directly change the direction of the velocity vector. The velocity is…

Mathematical Physics · Physics 2014-06-11 Felix Dietrich , Gerta Köster

This work presents an omics-driven modeling pipeline that integrates machine-learning tools to facilitate the dynamic modeling of multiscale biological systems. Random forests and permutation feature importance are proposed to mine omics…

Quantitative Methods · Quantitative Biology 2025-01-17 Sebastián Espinel-Ríos , José Montaño López , José L. Avalos

In recent years, deep learning has been connected with optimal control as a way to define a notion of a continuous underlying learning problem. In this view, neural networks can be interpreted as a discretization of a parametric Ordinary…

Optimization and Control · Mathematics 2020-07-07 Joubine Aghili , Olga Mula