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In molecular dynamics simulations under periodic boundary conditions, particle positions are typically wrapped into a reference box. For diffusion coefficient calculations using the Einstein relation, the particle positions need to be…

Computational Physics · Physics 2020-08-26 Sören von Bülow , Jakob Tómas Bullerjahn , Gerhard Hummer

A theoretical framework for evaluating the approximate energy and dynamic properties associated with the folding of DNA into nucleosomes and chromatin is presented. For this purpose experimentally determined elastic constants of linear DNA…

Biological Physics · Physics 2007-05-23 Thomas C. Bishop , Oleksandr O. Zhmudsky

The deep inelastic scattering of leptons off nuclei is considered within the the Bethe-Salpeter formalism. It is shown that nuclear short-range structure can be expressed in terms of the nucleon structure functions and four-dimensional…

Nuclear Theory · Physics 2007-05-23 Alexander Molochkov

The two-particle wave function of neutrino and recoil nucleus is found as a solution of an initial value problem in the far zone for a time longer than the electron capture decay lifetime of a hydrogenlike ion. The neutrino-recoil…

High Energy Physics - Phenomenology · Physics 2015-05-30 I. M. Pavlichenkov

Nucleocytoplasmic transport is essential for cellular function, presenting a canonical example of rapid molecular sorting inside cells. It consists of a coordinated interplay between import/export of molecules in/out the cell nucleus. Here,…

Biological Physics · Physics 2026-04-24 S. Alex Rautu , Alexandra Zidovska , Michael J. Shelley

Nucleon short-range correlations (SRCs) and their high-momentum tails (HMTs) encode key short-range dynamics in nuclei and dense matter. This review provides a concise overview of SRC features relevant to the Equation of State (EOS) of…

Nuclear Theory · Physics 2026-03-20 Bao-Jun Cai , Bao-An Li , Yu-Gang Ma

We investigate how vibration affects molecular photoemission dynamics, through simulations on two-dimension asymmetric model molecules including the electronic and nuclear motions in a fully correlated way. We show that a slight anisotropy…

Chemical Physics · Physics 2024-02-14 Antoine Desrier , Morgan Berkane , Camille Lévêque , Richard Taïeb , Jérémie Caillat

Nuclear spins in the proximity of electronic spin defects in solids are promising platforms for quantum information processing due to their ability to preserve quantum states for a remarkably long time. Here we report a comprehensive study…

Quantum Physics · Physics 2023-10-03 Mykyta Onizhuk , Giulia Galli

The influence of the intruder level on nuclear deformation is studied within the framework of the nucleon-pair shell model truncated to an SD-pair subspace. The results suggest that the intruder level has a tendency to soften the…

Nuclear Theory · Physics 2009-11-10 Yan An Luo , Chairul Bahri , Feng Pan , Jerry P. Draayer

A dynamical quark model of hadron and nucleus structure is proposed. In the frame of the model, called the Strongly Correlated Quark Model, quarks and nucleons inside nuclei are arranged in a crystal--like structure.

High Energy Physics - Phenomenology · Physics 2007-05-23 G. Musulmanbekov

Atomic nuclei can be spontaneously deformed into non-spherical shapes as many-nucleon systems. We discuss to what extent a similar deformation takes place in many-electron systems. To this end, we employ several many-body methods, such as…

Atomic Physics · Physics 2021-09-24 Tomoya Naito , Shimpei Endo , Kouichi Hagino , Yusuke Tanimura

Active fluids, such as cytoskeletal filaments, bacterial colonies and epithelial cell layers, exhibit distinctive orientational coherence, often characterized by nematic order and topological defects. By contrast, little is known about…

Soft Condensed Matter · Physics 2021-04-07 Mattia Serra , Linnea Lemma , Luca Giomi , Zvonimir Dogic , L. Mahadevan

Ultrafast photoinduced dynamics of electronic excitation in molecular dimers is drastically affected by the dynamic reorganization of inter- and intra- molecular nuclear configuration modeled by a quantized nuclear degree of freedom [Cina…

Mathematical Physics · Physics 2009-11-10 Dmitri S. Kilin , Yuri V. Pereversev , Oleg V. Prezhdo

A model Hamiltonian for the reaction CH$_4^+ \rightarrow$ CH$_3^+$ + H, parametrized to exhibit either early or late inner transition states, is employed to investigate the dynamical characteristics of the roaming mechanism. Tight/loose…

Chemical Physics · Physics 2015-06-18 F. A. L. Mauguière , P. Collins , G. S. Ezra , S. C. Farantos , S. Wiggins

The nuclear morphology of eukaryotic cells is determined by the interplay between the lamina forming the nuclear skeleton, the chromatin inside the nucleus and the coupling with the cytoskeleton. Nuclear alterations are often associated…

The EMC effect in deuterium and helium-3 is studied using a convolution formalism that allows isolating the impact of high-momentum nucleons in short-ranged correlated (SRC) pairs. We assume that the modification of the structure function…

High Energy Physics - Phenomenology · Physics 2021-06-30 E. P. Segarra , J. R. Pybus , F. Hauenstein , D. W. Higinbotham , G. A. Miller , E. Piasetzky , A. Schmidt , M. Strikman , L. B. Weinstein , O. Hen

A binary mixture of super-paramagnetic colloidal particles is confined between glass plates such that the large particles become fixed and provide a two-dimensional disordered matrix for the still mobile small particles, which form a fluid.…

The collective structure of atomic nuclei intermediate between spherical and quadrupole deformed structure presents challenges to theoretical understanding. However, models have recently been proposed in terms of potentials which are soft…

Nuclear Experiment · Physics 2020-01-07 M. A. Caprio

The reduced dynamics of an atomic qubit coupled both to its own quantized center of mass motion through the spatial mode functions of the electromagnetic field, as well as the vacuum modes, is calculated in the influence functional…

Quantum Physics · Physics 2009-11-10 S. Shresta , B. L. Hu

Low-energy excitations play a key role in all condensed-matter systems, yet there is limited understanding of their nature in glasses, where they correspond to local rearrangements of groups of particles. Here we introduce an algorithm to…

Soft Condensed Matter · Physics 2024-08-27 Wencheng Ji , Massimo Pica Ciamarra , Matthieu Wyart
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