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Tree edit distance is a well-studied measure of dissimilarity between rooted trees with node labels. It can be computed in $O(n^3)$ time [Demaine, Mozes, Rossman, and Weimann, ICALP 2007], and fine-grained hardness results suggest that the…

Data Structures and Algorithms · Computer Science 2021-06-11 Shyan Akmal , Ce Jin

The structure of an evolving network contains information about its past. Extracting this information efficiently, however, is, in general, a difficult challenge. We formulate a fast and efficient method to estimate the most likely history…

Physics and Society · Physics 2020-09-16 Gábor Timár , Rui A. da Costa , Sergey N. Dorogovtsev , José F. F. Mendes

Transient faults corrupt the content and organization of data structures. A recovery technique dealing with such faults is stabilization, which guarantees, following some number of operations on the data structure, that content of the data…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-09-25 Ted Herman , Toshimitsu Masuzawa

It is known that any two trees on the same $n$ leaves can be displayed by a network with $n-2$ reticulations, and there are two trees that cannot be displayed by a network with fewer reticulations. But how many reticulations are needed to…

Combinatorics · Mathematics 2026-03-11 Mathias Weller , Norbert Zeh

Given access to the vertex set $V$ of a connected graph $G=(V,E)$ and an oracle that given two vertices $u,v\in V$, returns the shortest path distance between $u$ and $v$, how many queries are needed to reconstruct $E$? Firstly, we show…

Data Structures and Algorithms · Computer Science 2024-10-17 Paul Bastide , Carla Groenland

The forest-of-octrees approach to parallel adaptive mesh refinement and coarsening (AMR) has recently been demonstrated in the context of a number of large-scale PDE-based applications. Although linear octrees, which store only leaf…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-11-05 Tobin Isaac , Carsten Burstedde , Lucas C. Wilcox , Omar Ghattas

Frequent tree mining asks us to enumerate tree patterns that occur frequently in a database of rooted trees. This problem is motivated by tree-structured data in bioinformatics, such as glycans and pseudoknot-free RNA secondary structures.…

Data Structures and Algorithms · Computer Science 2026-05-21 Kenta Komoto , Kazuhiro Kurita , Hirotaka Ono

Recombining trinomial trees are a workhorse for modeling discrete-event systems in option pricing, logistics, and feedback control. Because each node stores a state-dependent quantity, a depth-$D$ tree naively yields $\mathcal{O}(3^{D})$…

Data Structures and Algorithms · Computer Science 2025-10-06 Ethan Torres , Ramavarapu Sreenivas , Richard Sowers

In this paper, we consider decision trees that use both queries based on one attribute each and queries based on hypotheses about values of all attributes. Such decision trees are similar to ones studied in exact learning, where not only…

Computational Complexity · Computer Science 2022-03-18 Mohammad Azad , Igor Chikalov , Shahid Hussain , Mikhail Moshkov , Beata Zielosko

For a labelled tree on the vertex set $[n]:=\{1,2,..., n\}$, define the direction of each edge $ij$ to be $i\to j$ if $i<j$. The indegree sequence of $T$ can be considered as a partition $\lambda \vdash n-1$. The enumeration of trees with a…

Combinatorics · Mathematics 2009-04-02 Rosena R. X. Du , Jingbin Yin

In this paper we present a novel algorithm for concurrent lock-free internal binary search trees (BST) and implement a Set abstract data type (ADT) based on that. We show that in the presented lock-free BST algorithm the amortized step…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-05-12 Bapi Chatterjee , Nhan Nguyen , Philippas Tsigas

Avraham et al. [AFK+15] presented an alternative approach to parametric search, called \emph{bifurcation}, that performs faster under certain circumstances. Intuitively, when the underlying decider execution can be rolled back cheaply and…

Computational Geometry · Computer Science 2025-10-03 Sariel Har-Peled

An evolutionary tree (phylogenetic tree) is a binary, rooted, unordered tree that models the evolutionary history of currently living species in which leaves are labeled by species. In this paper, we investigate the problem of finding the…

Populations and Evolution · Quantitative Biology 2013-04-02 Soheil Jahangiri Tazehkand , Seyed Naser Hashemi , Hadi Poormohammadi

In this paper we examine planted binary plane trees. First, we provide an exact formula for the number of planted binary trees with given Horton-Strahler orders. Then, using the notion of entropy, we examine the structural complexity of…

Discrete Mathematics · Computer Science 2018-05-24 Evgenia V. Chunikhina

The tree-depth problem can be seen as finding an elimination tree of minimum height for a given input graph $G$. We introduce a bicriteria generalization in which additionally the width of the elimination tree needs to be bounded by some…

Data Structures and Algorithms · Computer Science 2021-05-31 Piotr Borowiecki , Dariusz Dereniowski , Dorota Osula

This paper introduces a series of methods for traversing binary decision trees using arithmetic operations. We present a suite of binary tree traversal algorithms that leverage novel representation matrices to flatten the full binary tree…

Machine Learning · Computer Science 2024-11-18 Jinxiong Zhang

In the famous network creation game of Fabrikant et al. a set of agents play a game to build a connected graph. The $n$ agents form the vertex set $V$ of the graph and each vertex $v\in V$ buys a set $E_v$ of edges inducing a graph…

Combinatorics · Mathematics 2023-10-16 Jack Dippel , Adrian Vetta

Bayesian inference for high-dimensional inverse problems is computationally costly and requires selecting a suitable prior distribution. Amortized variational inference addresses these challenges via a neural network that approximates the…

Machine Learning · Statistics 2023-01-19 Ali Siahkoohi , Gabrio Rizzuti , Rafael Orozco , Felix J. Herrmann

A tree with $n$ vertices has at most $95^{n/13}$ minimal dominating sets. The growth constant $\lambda = \sqrt[13]{95} \approx 1.4194908$ is best possible. It is obtained in a semi-automatic way as a kind of "dominant eigenvalue" of a…

Discrete Mathematics · Computer Science 2019-03-13 Günter Rote

Motivated by recent developments in optical switching and reconfigurable network design, we study dynamic binary search trees (BSTs) in the matching model. In the classical dynamic BST model, the cost of both link traversal and basic…

Data Structures and Algorithms · Computer Science 2020-12-29 Chen Avin