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Inquiries such as whether a task A depends on a task B, whether an author A has been influenced by a paper B, whether a certain protein is associated with a specific biological process or molecular function, or whether class A inherits from…

Data Structures and Algorithms · Computer Science 2024-05-02 Giorgos Kritikakis , Ioannis G Tollis

Graphlets are subgraphs rooted at a fixed vertex. The number of occurrences of graphlets aligned to a particular vertex, called graphlet degree sequence (gds), gives a topological description of the surrounding of the analyzed vertex.…

Combinatorics · Mathematics 2026-01-01 David Hartman , Aneta Pokorná , Daniel Trlifaj , Lluís Vena

We present algorithms and experiments for the visualization of directed graphs that focus on displaying their reachability information. Our algorithms are based on the concepts of the path and channel decomposition as proposed in the…

Data Structures and Algorithms · Computer Science 2019-07-29 Panagiotis Lionakis , Giacomo Ortali , Ioannis G. Tollis

Navigational queries for graph-structured data, such as the regular path queries and the context-free path queries, are usually evaluated to a relation of node-pairs $(m, n)$ such that there is a path from $m$ to $n$ satisfying the…

Databases · Computer Science 2016-02-02 Jelle Hellings

Temporal graphs (in which edges are active at specified times) are of particular relevance for spreading processes on graphs, e.g.~the spread of disease or dissemination of information. Motivated by real-world applications, modification of…

Computational Complexity · Computer Science 2022-12-22 Jessica Enright , Kitty Meeks , Fiona Skerman

For an undirected $n$-vertex graph $G$ with non-negative edge-weights, we consider the following type of query: given two vertices $s$ and $t$ in $G$, what is the weight of a minimum $st$-cut in $G$? We solve this problem in preprocessing…

Computational Geometry · Computer Science 2015-12-24 Glencora Borradaile , David Eppstein , Amir Nayyeri , Christian Wulff-Nilsen

The dynamic shortest paths problem on planar graphs asks us to preprocess a planar graph $G$ such that we may support insertions and deletions of edges in $G$ as well as distance queries between any two nodes $u,v$ subject to the constraint…

Data Structures and Algorithms · Computer Science 2016-05-13 Amir Abboud , Søren Dahlgaard

Consider a pair of plane straight-line graphs, whose edges are colored red and blue, respectively, and let n be the total complexity of both graphs. We present a O(n log n)-time O(n)-space technique to preprocess such pair of graphs, that…

Computational Geometry · Computer Science 2017-05-09 John Iacono , Elena Khramtcova , Stefan Langerman

We say a directed graph $G$ on $n$ vertices is irredundant if the removal of any edge reduces the number of ordered pairs of distinct vertices $(u,v)$ such that there exists a directed path from $u$ to $v$. We determine the maximum possible…

Combinatorics · Mathematics 2024-09-19 Stelios Stylianou

Delay-tolerant networks (DTNs) are characterized by a possible absence of end-to-end communication routes at any instant. Still, connectivity can generally be established over time and space. The optimality of a temporal path (journey) in…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-04-16 Arnaud Casteigts , Paola Flocchini , Bernard Mans , Nicola Santoro

To solve many problems on graphs, graph traversals are used, the usual variants of which are the depth-first search and the breadth-first search. Implementing a graph traversal we consequently reach all vertices of the graph that belong to…

Discrete Mathematics · Computer Science 2025-02-18 A. V. Prolubnikov

A drawing of a graph is greedy if for each ordered pair of vertices u and v, there is a path from u to v such that the Euclidean distance to v decreases monotonically at every vertex of the path. The existence of greedy drawings has been…

The hitting time, h_uv, of a random walk on a finite graph G, is the expected time for the walk to reach vertex v given that it started at vertex u. We present two methods of calculating the hitting time between vertices of finite graphs,…

Probability · Mathematics 2012-08-13 Shravas Rao

We study algorithmic questions for concurrent systems where the transitions are labeled from a complete, closed semiring, and path properties are algebraic with semiring operations. The algebraic path properties can model dataflow analysis…

Programming Languages · Computer Science 2015-11-27 Krishnendu Chatterjee , Amir Kafshdar Goharshady , Rasmus Ibsen-Jensen , Andreas Pavlogiannis

There has been significant recent interest in parallel graph processing due to the need to quickly analyze the large graphs available today. Many graph codes have been designed for distributed memory or external memory. However, today even…

Data Structures and Algorithms · Computer Science 2019-08-22 Laxman Dhulipala , Guy E. Blelloch , Julian Shun

In this paper, we show that for any positive integer $m$ and $k\in [2]$, let $G$ be a $(2m+2k+2)$-connected graph and let $a_1,\ldots , a_m, s, t$ be any distinct vertices of $G$, there are $k$ internally disjoint $s$-$t$ paths $P_1,…

Combinatorics · Mathematics 2024-02-21 Yuzhen Qi , Jin Yan

In the Directed Steiner Network problem we are given an arc-weighted digraph $G$, a set of terminals $T \subseteq V(G)$, and an (unweighted) directed request graph $R$ with $V(R)=T$. Our task is to output a subgraph $G' \subseteq G$ of the…

Discrete Mathematics · Computer Science 2018-02-23 Eduard Eiben , Dušan Knop , Fahad Panolan , Ondřej Suchý

The area of sublinear algorithms have recently received a lot of attention. In this setting, one has to choose specific access model for the input, as the algorithm does not have time to pre-process or even to see the whole input. A…

Data Structures and Algorithms · Computer Science 2020-09-24 Jakub Tětek

In this paper, we continue the study of the Hamiltonian and longest $(s, t)$-paths of supergrid graphs. The Hamiltonian $(s, t)$-path of a graph is a Hamiltonian path between any two given vertices $s$ and $t$ in the graph, and the longest…

Discrete Mathematics · Computer Science 2019-11-21 Ruo-Wei Hung , Fatemeh Keshavarz-Kohjerdi

Motivated by applications to graph morphing, we consider the following \emph{compatible connectivity-augmentation problem}: We are given a labelled $n$-vertex planar graph, $\mathcal{G}$, that has $r\ge 2$ connected components, and $k\ge 2$…

Computational Geometry · Computer Science 2014-08-12 Greg Aloupis , Luis Barba , Paz Carmi , Vida Dujmović , Fabrizio Frati , Pat Morin
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