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Nonlinear manifold learning from unorganized data points is a very challenging unsupervised learning and data visualization problem with a great variety of applications. In this paper we present a new algorithm for manifold learning and…

Machine Learning · Computer Science 2016-08-31 Zhenyue Zhang , Hongyuan Zha

Topological data analysis (TDA) provides a growing body of tools for computing geometric and topological information about spaces from a finite sample of points. We present a new adaptive algorithm for finding provably dense samples of…

Algebraic Topology · Mathematics 2018-10-22 Emilie Dufresne , Parker B. Edwards , Heather A. Harrington , Jonathan D. Hauenstein

The manifold hypothesis suggests that high-dimensional data often lie on or near a low-dimensional manifold. Estimating the dimension of this manifold is essential for leveraging its structure, yet existing work on dimension estimation is…

Machine Learning · Computer Science 2026-04-02 Zelong Bi , Pierre Lafaye de Micheaux

High computational costs of manifold learning prohibit its application for large point sets. A common strategy to overcome this problem is to perform dimensionality reduction on selected landmarks and to successively embed the entire…

Machine Learning · Computer Science 2015-03-13 Christian Wachinger , Polina Golland

We present a framework for learning probability distributions on topologically non-trivial manifolds, utilizing normalizing flows. Current methods focus on manifolds that are homeomorphic to Euclidean space, enforce strong structural priors…

Machine Learning · Computer Science 2022-07-12 Dimitris Kalatzis , Johan Ziruo Ye , Alison Pouplin , Jesper Wohlert , Søren Hauberg

When training transformers on graph-structured data, incorporating information about the underlying topology is crucial for good performance. Topological masking, a type of relative position encoding, achieves this by upweighting or…

The problem of finding suitable point embedding or geometric configurations given only Euclidean distance information of point pairs arises both as a core task and as a sub-problem in a variety of machine learning applications. In this…

Machine Learning · Computer Science 2024-10-23 Ipsita Ghosh , Abiy Tasissa , Christian Kümmerle

Network (or graph) sparsification compresses a graph by removing inessential edges. By reducing the data volume, it accelerates or even facilitates many downstream analyses. Still, the accuracy of many sparsification methods, with…

Social and Information Networks · Computer Science 2023-09-28 Zhen Su , Jürgen Kurths , Henning Meyerhenke

Persistent homology of the Rips filtration allows to track topological features of a point cloud over scales, and is a foundational tool of topological data analysis. Unfortunately, the Rips-filtration is exponentially sized, when…

Computational Geometry · Computer Science 2018-07-27 Bernhard Brehm , Hanne Hardering

The homology groups of a manifold are important topological invariants that provide an algebraic summary of the manifold. These groups contain rich topological information, for instance, about the connected components, holes, tunnels and…

Machine Learning · Statistics 2013-07-30 Sivaraman Balakrishnan , Alessandro Rinaldo , Aarti Singh , Larry Wasserman

Embedding graphs in continous spaces is a key factor in designing and developing algorithms for automatic information extraction to be applied in diverse tasks (e.g., learning, inferring, predicting). The reliability of graph embeddings…

Machine Learning · Computer Science 2023-11-30 Andrea Marinoni , Pietro Lio' , Alessandro Barp , Christian Jutten , Mark Girolami

Persistent homology is a cornerstone of topological data analysis, offering a multiscale summary of topology with robustness to nuisance transformations, such as rotations and small deformations. Persistent homology has seen broad use…

Methodology · Statistics 2025-11-19 Zitian Wu , Arkaprava Roy , Leo L. Duan

We introduce numerical algebraic geometry methods for computing lower bounds on the reach, local feature size, and the weak feature size of the real part of an equidimensional and smooth algebraic variety using the variety's defining…

Algebraic Geometry · Mathematics 2022-09-07 Sandra Di Rocco , Parker B. Edwards , David Eklund , Oliver Gäfvert , Jonathan D. Hauenstein

Many approaches in the field of machine learning and data analysis rely on the assumption that the observed data lies on lower-dimensional manifolds. This assumption has been verified empirically for many real data sets. To make use of this…

Machine Learning · Computer Science 2022-09-27 Erik Thordsen , Erich Schubert

Through the use of examples, we explain one way in which applied topology has evolved since the birth of persistent homology in the early 2000s. The first applications of topology to data emphasized the global shape of a dataset, such as…

Algebraic Topology · Mathematics 2021-04-23 Henry Adams , Michael Moy

This paper aims to discuss a method of quantifying the 'shape' of data, via a methodology called topological data analysis. The main tool within topological data analysis is persistent homology; this is a means of measuring the shape of…

Algebraic Topology · Mathematics 2022-09-14 Tristan Gowdridge , Nikolaos Devilis , Keith Worden

The problem of embedding a set of objects into a low-dimensional Euclidean space based on a matrix of pairwise dissimilarities is fundamental in data analysis, machine learning, and statistics. However, the assumptions of many standard…

Computational Geometry · Computer Science 2025-08-21 Omid Arhami , Pejman Rohani

In statistical dimensionality reduction, it is common to rely on the assumption that high dimensional data tend to concentrate near a lower dimensional manifold. There is a rich literature on approximating the unknown manifold, and on…

Machine Learning · Statistics 2022-02-22 Didong Li , Minerva Mukhopadhyay , David B. Dunson

The increasing availability of full-field displacement data from imaging techniques in experimental mechanics is determining a gradual shift in the paradigm of material model calibration and discovery, from using several simple-geometry…

Computational Engineering, Finance, and Science · Computer Science 2025-07-01 Saeid Ghouli , Moritz Flaschel , Siddhant Kumar , Laura De Lorenzis

Spectral hypergraph sparsification, an attempt to extend well-known spectral graph sparsification to hypergraphs, has been extensively studied over the past few years. For undirected hypergraphs, Kapralov, Krauthgamer, Tardos, and…

Data Structures and Algorithms · Computer Science 2023-05-12 Kazusato Oko , Shinsaku Sakaue , Shin-ichi Tanigawa