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The distance geometry problem asks to find a realization of a given simple edge-weighted graph in a Euclidean space of given dimension K, where the edges are realized as straight segments of lengths equal (or as close as possible) to the…

Optimization and Control · Mathematics 2023-07-31 Leo Liberti , Gabriele Iommazzo , Carlile Lavor , Nelson Maculan

Graphs are versatile tools for representing structured data. As a result, a variety of machine learning methods have been studied for graph data analysis. Although many such learning methods depend on the measurement of differences between…

Machine Learning · Statistics 2021-06-18 Tomoki Yoshida , Ichiro Takeuchi , Masayuki Karasuyama

Notions of graph similarity provide alternative perspective on the graph isomorphism problem and vice-versa. In this paper, we consider measures of similarity arising from mismatch norms as studied in Gervens and Grohe: the edit distance…

Discrete Mathematics · Computer Science 2026-05-07 He Sun , Danny Vagnozzi

Graph embedding methods aim at finding useful graph representations by mapping nodes to a low-dimensional vector space. It is a task with important downstream applications, such as link prediction, graph reconstruction, data visualization,…

Machine Learning · Computer Science 2022-09-13 Said Kerrache , Hafida Benhidour

Edit-distance-based string similarity search has many applications such as spell correction, data de-duplication, and sequence alignment. However, computing edit distance is known to have high complexity, which makes string similarity…

Databases · Computer Science 2020-05-25 Xinyan Dai , Xiao Yan , Kaiwen Zhou , Yuxuan Wang , Han Yang , James Cheng

Graph Neural Network (GNN) research has produced strategies to modify a graph's edges using gradients from a trained GNN, with the goal of network design. However, the factors which govern gradient-based editing are understudied, obscuring…

Machine Learning · Computer Science 2023-10-27 Donald Loveland , Rajmonda Caceres

The computation of distance measures between nodes in graphs is inefficient and does not scale to large graphs. We explore dense vector representations as an effective way to approximate the same information: we introduce a simple yet…

Computation and Language · Computer Science 2019-06-18 Andrey Kutuzov , Mohammad Dorgham , Oleksiy Oliynyk , Chris Biemann , Alexander Panchenko

Graphs drawn in the plane are ubiquitous, arising from data sets through a variety of methods ranging from GIS analysis to image classification to shape analysis. A fundamental problem in this type of data is comparison: given a set of such…

Computational Geometry · Computer Science 2022-10-20 Levent Batakci , Abigail Branson , Bryan Castillo , Candace Todd , Erin Wolf Chambers , Elizabeth Munch

Geometric graphs appear in many real-world data sets, such as road networks, sensor networks, and molecules. We investigate the notion of distance between embedded graphs and present a metric to measure the distance between two geometric…

Data Structures and Algorithms · Computer Science 2024-07-15 Erin Wolf Chambers , Elizabeth Munch , Sarah Percival , Xinyi Wang

In this work we define a novel edit distance for trees considered with some abstract weights on the edges. The metric is driven by the idea of considering trees as topological summaries in the context of persistence and topological data…

Combinatorics · Mathematics 2025-07-25 Matteo Pegoraro

The Earth Mover's Distance (EMD) is a state-of-the art metric for comparing discrete probability distributions, but its high distinguishability comes at a high cost in computational complexity. Even though linear-complexity approximation…

Machine Learning · Computer Science 2019-05-29 Kubilay Atasu , Thomas Mittelholzer

Statement autoformalization, the automated translation of statements from natural language into formal languages, has become a subject of extensive research, yet the development of robust automated evaluation metrics remains limited.…

Machine Learning · Computer Science 2025-08-25 Yuntian Liu , Tao Zhu , Xiaoyang Liu , Yu Chen , Zhaoxuan Liu , Qingfeng Guo , Jiashuo Zhang , Kangjie Bao , Tao Luo

In this work, we propose a novel knowledge graph alignment technique based upon string edit distance that exploits the type information between entities and can find similarity between relations of any arity

Artificial Intelligence · Computer Science 2020-03-31 Navdeep Kaur , Gautam Kunapuli , Sriraam Natarajan

Graph generation is a crucial task in many fields, including network science and bioinformatics, as it enables the creation of synthetic graphs that mimic the properties of real-world networks for various applications. Graph Generative…

Machine Learning · Computer Science 2026-01-21 Salvatore Romano , Marco Grassia , Giuseppe Mangioni

Edge-labeled graphs are widely used to describe relationships between entities in a database. Given a query subgraph that represents an example of what the user is searching for, we study the problem of efficiently searching for similar…

Databases · Computer Science 2020-05-12 Zhaoyang Shao , Davood Rafiei , Themis Palpanas

Recently, more and more research has focused on using Graph Neural Networks (GNN) to solve the Graph Similarity Computation problem (GSC), i.e., computing the Graph Edit Distance (GED) between two graphs. These methods treat GSC as an…

Artificial Intelligence · Computer Science 2023-08-29 Jiaxi Lv , Liang Zhang , Yi Huang , Jiancheng Huang , Shifeng Chen

Many modern data analysis algorithms either assume that or are considerably more efficient if the distances between the data points satisfy a metric. These algorithms include metric learning, clustering, and dimensionality reduction.…

Data Structures and Algorithms · Computer Science 2018-07-23 Anna C. Gilbert , Rishi Sonthalia

The rise of graph representation learning as the primary solution for many different network science tasks led to a surge of interest in the fairness of this family of methods. Link prediction, in particular, has a substantial social…

Machine Learning · Computer Science 2023-02-23 Indro Spinelli , Riccardo Bianchini , Simone Scardapane

In this paper, we present a novel error measure to compare a segmentation against ground truth. This measure, which we call Tolerant Edit Distance (TED), is motivated by two observations: (1) Some errors, like small boundary shifts, are…

Computer Vision and Pattern Recognition · Computer Science 2016-02-02 Jan Funke , Francesc Moreno-Noguer , Albert Cardona , Matthew Cook

Vertex connectivity and edge connectivity are fundamental concepts in graph theory that have been widely studied from both structural and algorithmic perspectives. The focus of this paper is on computing these two parameters for graphs…

Data Structures and Algorithms · Computer Science 2025-10-14 Therese Biedl , Prosenjit Bose , Karthik Murali
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