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Finding an optimal assignment between two sets of objects is a fundamental problem arising in many applications, including the matching of `bag-of-words' representations in natural language processing and computer vision. Solving the…

Machine Learning · Computer Science 2019-09-12 Nils M. Kriege , Pierre-Louis Giscard , Franka Bause , Richard C. Wilson

We consider the graph similarity computation (GSC) task based on graph edit distance (GED) estimation. State-of-the-art methods treat GSC as a learning-based prediction task using Graph Neural Networks (GNNs). To capture fine-grained…

Machine Learning · Computer Science 2024-06-24 Wei Zhuo , Guang Tan

Graph comparison deals with identifying similarities and dissimilarities between graphs. A major obstacle is the unknown alignment of graphs, as well as the lack of accurate and inexpensive comparison metrics. In this work we introduce the…

Machine Learning · Computer Science 2021-12-09 Hermina Petric Maretic , Mireille El Gheche , Giovanni Chierchia , Pascal Frossard

An important problem in geometric computing is defining and computing similarity between two geometric shapes, e.g. point sets, curves and surfaces, etc. Important geometric and topological information of many shapes can be captured by…

Computational Geometry · Computer Science 2015-08-17 Hangjun Xu

Twin-width is a recently formulated graph and matrix invariant that intuitively quantifies how far a graph is from having the structural simplicity of a co-graph. Since its introduction in 2020, twin-width has received increasing attention…

Data Structures and Algorithms · Computer Science 2025-11-11 Andrei Arhire , Matei Chiriac , Radu Timofte

Reeb graphs are structural descriptors that capture shape properties of a topological space from the perspective of a chosen function. In this work we define a combinatorial metric for Reeb graphs of orientable surfaces in terms of the cost…

Computational Geometry · Computer Science 2014-11-07 Barbara Di Fabio , Claudia Landi

Text similarity calculation is a fundamental problem in natural language processing and related fields. In recent years, deep neural networks have been developed to perform the task and high performances have been achieved. The neural…

Computation and Language · Computer Science 2018-10-26 Yilin Niu , Chao Qiao , Hang Li , Minlie Huang

Program similarity is a fundamental concept, central to the solution of software engineering tasks such as software plagiarism, clone identification, code refactoring and code search. Accurate similarity estimation between programs requires…

Machine Learning · Computer Science 2020-07-31 Aravind Nair , Avijit Roy , Karl Meinke

In this paper we study the geometry of graph spaces endowed with a special class of graph edit distances. The focus is on geometrical results useful for statistical pattern recognition. The main result is the Graph Representation Theorem.…

Computer Vision and Pattern Recognition · Computer Science 2015-06-01 Brijnesh J. Jain

The edit distance between two graphs on the same vertex set is defined to be size of the symmetric difference of their edge sets. The edit distance function of a hereditary property, $\mathcal{H}$, is a function of $p$ and measures,…

Combinatorics · Mathematics 2011-02-22 Ryan Martin , Tracy McKay

Graph is a natural representation of data for a variety of real-word applications, such as knowledge graph mining, social network analysis and biological network comparison. For these applications, graph embedding is crucial as it provides…

Machine Learning · Computer Science 2020-01-24 Bitan Hou , Yujing Wang , Ming Zeng , Shan Jiang , Ole J. Mengshoel , Yunhai Tong , Jing Bai

Graph embeddings have emerged as a powerful tool for representing complex network structures in a low-dimensional space, enabling the use of efficient methods that employ the metric structure in the embedding space as a proxy for the…

Social and Information Networks · Computer Science 2024-04-18 Radosław Nowak , Adam Małkowski , Daniel Cieślak , Piotr Sokół , Paweł Wawrzyński

In this article, we propose tree edit distance with variables, which is an extension of the tree edit distance to handle trees with variables and has a potential application to measuring the similarity between mathematical formulas,…

Data Structures and Algorithms · Computer Science 2021-05-12 Tatsuya Akutsu , Tomoya Mori , Naotoshi Nakamura , Satoshi Kozawa , Yuhei Ueno , Thomas N. Sato

In this paper we offer a metric similar to graph edit distance which measures the distance between two (possibly infinite)weighted graphs with finite norm (we define the norm of a graph as the sum of absolute values of its edges). The main…

Metric Geometry · Mathematics 2009-06-16 Hamed Daneshpajouh , Hamid Reza Daneshpajouh , Farzad Didehvar

In this paper, we propose a new type of graph, denoted as "embedded-graph", and its theory, which employs a distributed representation to describe the relations on the graph edges. Embedded-graphs can express linguistic and complicated…

Discrete Mathematics · Computer Science 2017-09-15 Atsushi Yokoyama

Evaluating similarity between graphs is of major importance in several computer vision and pattern recognition problems, where graph representations are often used to model objects or interactions between elements. The choice of a distance…

Computer Vision and Pattern Recognition · Computer Science 2017-06-15 Sofia Ira Ktena , Sarah Parisot , Enzo Ferrante , Martin Rajchl , Matthew Lee , Ben Glocker , Daniel Rueckert

The edit distance between two graphs on the same labeled vertex set is the size of the symmetric difference of the edge sets. The distance between a graph, $G$, and a hereditary property, ${\cal H}$, is the minimum of the distance between…

Combinatorics · Mathematics 2016-05-24 Ryan R. Martin

Graph entity dependencies (GEDs) are novel graph constraints, unifying keys and functional dependencies, for property graphs. They have been found useful in many real-world data quality and data management tasks, including fact checking on…

Databases · Computer Science 2023-07-04 Dehua Liu , Selasi Kwashie , Yidi Zhang , Guangtong Zhou , Michael Bewong , Xiaoying Wu , Xi Guo , Keqing He , Zaiwen Feng

Straight-forward conformation generation models, which generate 3-D structures directly from input molecular graphs, play an important role in various molecular tasks with machine learning, such as 3D-QSAR and virtual screening in drug…

Biomolecules · Quantitative Biology 2022-03-16 Shuwen Yang , Tianyu Wen , Ziyao Li , Guojie Song

Existing methods for evaluating graph generative models primarily rely on Maximum Mean Discrepancy (MMD) metrics based on graph descriptors. While these metrics can rank generative models, they do not provide an absolute measure of…

Machine Learning · Computer Science 2026-03-18 Markus Krimmel , Philip Hartout , Karsten Borgwardt , Dexiong Chen