Related papers: Locating Patterns in the De Bruijn Torus

Orientable sequences of order n are infinite periodic sequences with symbols drawn from a finite alphabet of size k with the property that any particular subsequence of length n occurs at most once in a period in either direction. They were…

Binary time series data are very common in many applications, and are typically modelled independently via a Bernoulli process with a single probability of success. However, the probability of a success can be dependent on the outcome…

Kautz and de Bruijn graphs have a high degree of connectivity which makes them ideal candidates for massively parallel computer network topologies. In order to realize a practical computer architecture based on these graphs, it is useful to…

We introduce the Parikh-de-Bruijn grid, a graph whose vertices are fixed-order Parikh vectors, and whose edges are given by a simple shift operation. This graph gives structural insight into the nature of sets of Parikh vectors as well as…

Every binary De~Bruijn sequence of order n satisfies a recursion 0=x_n+x_0+g(x_{n-1}, ..., x_1). Given a function f on (n-1) bits, let N(f; r) be the number of functions generating a De Bruijn sequence of order n which are obtained by…

A new ordering, extending the notion of universal cycles of Chung {\em et al.} (1992), is proposed for the blocks of $k$-uniform set systems. Existence of minimum coverings of pairs by triples that possess such an ordering is established…

For a set of integers $I$, we define a $q$-ary $I$-cycle to be a assignment of the symbols 1 through $q$ to the integers modulo $q^n$ so that every word appears on some translate of $I$. This definition generalizes that of de Bruijn cycles,…

Universal Cycles, or U-cycles, as originally defined by de Bruijn, are an efficient method to exhibit a large class of combinatorial objects in a compressed fashion, and with no repeats. de Bruijn's theorem states that U-cycles for $n$…

An $(m,n,R)$-de Bruijn covering array (dBCA) is a doubly periodic $M \times N$ array over an alphabet of size $q$ such that the set of all its $m \times n$ windows form a covering code with radius $R$. An upper bound of the smallest array…

A set of $n$ points in the Euclidean plane determines at least $n$ distinct lines unless these $n$ points are collinear. In 2006, Chen and Chv\'atal asked whether the same statement holds true in general metric spaces, where the line…

We generalize the notion of a de Bruijn sequence to a "multi de Bruijn sequence": a cyclic or linear sequence that contains every k-mer over an alphabet of size q exactly m times. For example, over the binary alphabet {0,1}, the cyclic…

A universal cycle for a set S of combinatorial objects is a cyclic sequence of length |S|that contains a representation of each element in S exactly once as a substring. If S is the set of k-subsets of [n] = {1, 2, . . . , n}, it is…

A de Bruijn covering code is a q-ary string S so that every q-ary string is at most R symbol changes from some n-word appearing consecutively in S. We introduce these codes and prove that they can have length close to the smallest possible…

We suggest a new point of view on de Bruijn graphs and their subgraphs based on using circular words rather than linear ones.

A de Bruijn sequence of order n over a k-symbol alphabet is a circular sequence where each length-n sequence occurs exactly once. We present a way of extending de Bruijn sequences by adding a new symbol to the alphabet: the extension is…

This paper introduces the de Bruijn graph edge minimization problem, which is related to the compression of de Bruijn graphs: find the order-k de Bruijn graph with minimum edge count among all orders. We describe an efficient algorithm that…

We study the Laplacian of the undirected De Bruijn graph over an alphabet $A$ of order $k$. While the eigenvalues of this Laplacian were found in 1998 by Delorme and Tillich [1], an explicit description of its eigenvectors has remained…

A simple method to generate a two-dimensional binary grid pattern, which allows for absolute and accurate self-location in a finite planar region, is proposed. The pattern encodes position information in a local way so that reading a small…

A connected digraph in which the in-degree of any vertex equals its out-degree is Eulerian; this baseline result is used as the basis of existence proofs for universal cycles (also known as deBruijn cycles or $U$-cycles) of several…

A de Bruijn sequence of order $k$ over a finite alphabet is a cyclic sequence with the property that it contains every possible $k$-sequence as a substring exactly once. Orthogonal de Bruijn sequences are collections of de Bruijn sequences…