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We present an Active Learning (AL) strategy for re-using a deep Convolutional Neural Network (CNN)-based object detector on a new dataset. This is of particular interest for wildlife conservation: given a set of images acquired with an…
To uncover the genetic basis of complex disease, individuals are often measured at a large number of genetic variants (usually SNPs) across the genome. GemTools provides computationally efficient tools for modeling genetic ancestry based on…
Qualitative Comparative Analysis (QCA) has been increasingly used in recent years due to its purported construction of a middle path between case-oriented and variable-oriented methods. Despite its popularity, a key element of the method…
Randomized Controlled Trials (RCTs) may suffer from limited scope. In particular, samples may be unrepresentative: some RCTs over- or under- sample individuals with certain characteristics compared to the target population, for which one…
The application of quantum machine learning to large-scale high-resolution image datasets is not yet possible due to the limited number of qubits and relatively high level of noise in the current generation of quantum devices. In this work,…
We present an alternative method for genome-wide association studies (GWAS) that is more powerful than the regular GWAS method for locus detection. The regular GWAS method suffers from a substantial multiple-testing burden because of the…
High-dimensional time series phenotypic data is becoming increasingly common within plant breeding programmes. However, analysing and integrating such data for genetic analysis and genomic prediction remains difficult. Here we show how…
With advancement of medicine, alternative exposures or interventions are emerging with respect to a common outcome, and there are needs to formally test the difference in the associations of multiple exposures. We propose a duplication…
A large number of approaches to Query Performance Prediction (QPP) have been proposed over the last two decades. As early as 2009, Hauff et al. [28] explored whether different QPP methods may be combined to improve prediction quality. Since…
The challenging problem of non-line-of-sight (NLOS) localization is critical for many wireless networking applications. The lack of available datasets has made NLOS localization difficult to tackle with ML-driven methods, but recent…
Due to the rapid growth of heterogeneous wireless networks (HWNs), where devices with diverse communication technologies coexist, there is increasing demand for efficient and adaptive multi-hop routing with multiple data flows. Traditional…
The traditional paradigm for developing machine prognostics usually relies on generalization from data acquired in experiments under controlled conditions prior to deployment of the equipment. Detecting or predicting failures and estimating…
A large number of recent genome-wide association studies (GWASs) for complex phenotypes confirm the early conjecture for polygenicity, suggesting the presence of large number of variants with only tiny or moderate effects. However, due to…
The increased availability of time series genetic variation data from experimental evolution studies and ancient DNA samples has created new opportunities to identify genomic regions under selective pressure and to estimate their associated…
Traditional geostatistical methods assume independence between observation locations and the spatial process of interest. Violations of this independence assumption are referred to as preferential sampling (PS). Standard methods to address…
As a discrete approach to genetic regulatory networks, Boolean models provide an essential qualitative description of the structure of interactions among genes and proteins. Boolean models generally assume only two possible states…
Expression quantitative trait loci (eQTL) analyses, which identify genetic markers associated with the expression of a gene, are an important tool in the understanding of diseases in human and other populations. While most eQTL studies to…
Transcriptome-wide association studies (TWAS) link genetic variation to complex traits by leveraging expression quantitative trait loci (eQTL) data. However, most implementations are typically limited to local (cis-acting) effects and fail…
Quantile-Quantile (Q-Q) plots are widely used for assessing the distributional similarity between two datasets. Traditionally, Q-Q plots are constructed for univariate distributions, making them less effective in capturing complex…
We investigate the behavior of the Generalized Likelihood Ratio Test (GLRT) (Fan, Zhang and Zhang [Ann. Statist. 29 (2001) 153-193]) for time varying coefficient models where the regressors and errors are non-stationary time series and can…