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Quantitative plant disease resistance is believed to be more durable than qualitative resistance, since it exerts less selective pressure on the pathogens. However, the process of progressive pathogen adaptation to quantitative resistance…

Populations and Evolution · Quantitative Biology 2014-10-24 Romain Bourget , Loïc Chaumont , Charles-Eric Durel , Natalia Sapoukhina

Arabidopsis thaliana is an important model organism for understanding the genetics and molecular biology of plants. Its highly selfing nature, together with other important features, such as small size, short generation time, small genome…

Quantitative Methods · Quantitative Biology 2013-08-12 Ümit Seren , Bjarni J. Vilhjálmsson , Matthew W. Horton , Dazhe Meng , Petar Forai , Yu S. Huang , Quan Long , Vincent Segura , Magnus Nordborg

Location-based services such as autonomous vehicles, drones, and indoor positioning require precise and scalable distance estimates. The bias and variance of range estimators inherently influence the resulting localization quality. In this…

Signal Processing · Electrical Eng. & Systems 2024-10-23 Patrick Rathje , Olaf Landsiedel

This paper examines methods of inference concerning quantile treatment effects (QTEs) in randomized experiments with matched-pairs designs (MPDs). Standard multiplier bootstrap inference fails to capture the negative dependence of…

Econometrics · Economics 2021-05-14 Liang Jiang , Xiaobin Liu , Peter C. B. Phillips , Yichong Zhang

Quantum walks (QWs) have a property that classical random walks (RWs) do not possess -- the coexistence of linear spreading and localization -- and this property is utilized to implement various kinds of applications. This paper proposes…

We demonstrate a method to double the collection efficiency in Laser Tweezers Raman Spectroscopy (LTRS) by collecting both the forward and back-scattered light in a single-shot multitrack measurement. Our method can collect signals at…

Optics · Physics 2021-06-09 Tobias Dahlberg , Magnus Andersson

Known for its dynamic utilization of destroy and repair operators, the Adaptive Large Neighborhood Search (ALNS) seeks to unearth high-quality solutions and has thus gained widespread acceptance as a meta-heuristic tool for tackling complex…

Optimization and Control · Mathematics 2024-03-01 Weiting Liu , Yunqi Luo , Yugang Yu

The discovery of genomic polymorphisms influencing gene expression (also known as expression quantitative trait loci or eQTLs) can be formulated as a sparse Bayesian multivariate/multiple regression problem. An important aspect in the…

Genomics · Quantitative Biology 2019-06-13 Dimitrios V Vavoulis

The problem of identifying regions of spatially interesting, different or adversarial behavior is inherent to many practical applications involving distributed multisensor systems. In this work, we develop a general framework stemming from…

Signal Processing · Electrical Eng. & Systems 2022-06-14 Martin Gölz , Abdelhak M. Zoubir , Visa Koivunen

The prevailing method of analyzing GWAS data is still to test each marker individually, although from a statistical point of view it is quite obvious that in case of complex traits such single marker tests are not ideal. Recently several…

Applications · Statistics 2015-06-19 Erich Dolejsi , Bernhard Bodenstorfer , Florian Frommlet

Traditional GWAS has advanced our understanding of complex diseases but often misses nonlinear genetic interactions. Deep learning offers new opportunities to capture complex genomic patterns, yet existing methods mostly depend on feature…

Machine Learning · Computer Science 2025-07-08 Iqra Farooq , Sara Atito , Ayse Demirkan , Inga Prokopenko , Muhammad Rana

Post-genomic research deals with challenging problems in screening genomes of organisms for particular functions or potential for being the targets of genetic engineering for desirable biological features. 'Phenotyping' of wild type and…

Quantitative Methods · Quantitative Biology 2010-09-06 Hesam T. Dashti , Jernej Tonejc , Adel Ardalan , Alireza F. Siahpirani , Sabrina Guettes , Zohreh Sharif , Liya Wang , Amir H. Assadi

An essential function for automated vehicle technologies is accurate localization. It is difficult, however, to achieve lane-level accuracy with low-cost Global Navigation Satellite System (GNSS) receivers due to the biased noisy…

Robotics · Computer Science 2016-09-01 Macheng Shen , Ding Zhao , Jing Sun

This work estimates the position and the transmit power of multiple co-channel wireless transmitters under model uncertainties. The model uncertainties include the number of the targets and the parameters of the path-loss model which enable…

Information Theory · Computer Science 2019-03-11 Ehsan Zandi , Rudolf Mathar

A common problem in data analysis is the separation of signal and background. We revisit and generalise the so-called $sWeights$ method, which allows one to calculate an empirical estimate of the signal density of a control variable using a…

Methodology · Statistics 2022-08-24 Hans Dembinski , Matthew Kenzie , Christoph Langenbruch , Michael Schmelling

Localization of radio frequency sources over multipath channels is a difficult problem arising in applications such as outdoor or indoor gelocation. Common approaches that combine ad-hoc methods for multipath mitigation with indirect…

Information Theory · Computer Science 2015-05-14 Nil Garcia , Alexander M. Haimovich , Martial Coulon , Jason A. Dabin

Synthetic lethality (SL) prediction is used to identify if the co-mutation of two genes results in cell death. The prevalent strategy is to abstract SL prediction as an edge classification task on gene nodes within SL data and achieve it…

Machine Learning · Computer Science 2023-10-18 Xusheng Zhao , Hao Liu , Qiong Dai , Hao Peng , Xu Bai , Huailiang Peng

Understanding the state of changed areas requires that precise information be given about the changes. Thus, detecting different kinds of changes is important for land surface monitoring. SAR sensors are ideal to fulfil this task, because…

Computer Vision and Pattern Recognition · Computer Science 2023-07-18 Weiying Zhao , Charles-Alban Deledalle , Loïc Denis , Henri Maître , Jean-Marie Nicolas , Florence Tupin

The problems of large-scale multiple testing are often encountered in modern scientific researches. Conventional multiple testing procedures usually suffer considerable loss of testing efficiency due to the lack of consideration of…

Methodology · Statistics 2022-12-21 Pengfei Wang , Zhaofeng Tian

This paper proposes parametric and non-parametric hypothesis testing algorithms for detecting anisotropy -- rotational variance of the covariance function in random fields. Both algorithms are based on resampling mechanisms, which enable…

Methodology · Statistics 2021-06-08 Assaf Rabinowicz , Saharon Rosset