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The purpose of this article is to show how the isotropy subgroup of leaf permutations on binary trees can be used to systematically identify tree-informative invariants relevant to models of phylogenetic evolution. In the quartet case, we…
We give a unified treatment of the limit, as the size tends to infinity, of simply generated random trees, including both the well-known result in the standard case of critical Galton--Watson trees and similar but less well-known results in…
We consider a model of random loops on Galton-Watson trees with an offspring distribution with high expectation. We give the configurations a weighting of $\theta^{\#\text{loops}}$. For many $\theta>1$ these models are equivalent to certain…
We calculate the density and expectation for the number of lineages in a reconstructed tree with $n$ extant species. This is done with conditioning on the age of the tree as well as with assuming a uniform prior for the age of the tree.
In a Bienaym\'{e}-Galton-Watson process for which there is a positiveprobability for individuals of having no offspring, there is a subtlebalance and dependence between the sterile nodes (the dead nodes or leaves)and the prolific ones (the…
Take a continuous-time Galton-Watson tree. If the system survives until a large time $T$, then choose $k$ particles uniformly from those alive. What does the ancestral tree drawn out by these $k$ particles look like? Some special cases are…
We study functional graphs generated by several quadratic polynomials, acting simultaneously on a finite field of odd characteristic. We obtain several results about the number of leaves in such graphs. In particular, in the case of graphs…
The Transformed-Transformer family of distributions are the resulting family of distributions as transformed from a random variable $T$ through another transformer random variable $X$ using a weight function $\omega$ of the cumulative…
We design a theoretic tree-based functional representation of a class of Feynman-Kac particle distributions, including an extension of the Wick product formula to interacting particle systems. These weak expansions rely on an original…
Image ordinal estimation is to predict the ordinal label of a given image, which can be categorized as an ordinal regression problem. Recent methods formulate an ordinal regression problem as a series of binary classification problems. Such…
We establish a variety of properties of the discrete time simple random walk on a Galton-Watson tree conditioned to survive when the offspring distribution, $Z$ say, is in the domain of attraction of a stable law with index…
We investigate a neutral model for speciation and extinction, the constant rate birth-death process. The process is conditioned to have $n$ extant species today, we look at the tree distribution of the reconstructed trees-- i.e. the trees…
Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…
This paper focuses on unsupervised modeling of morphological families, collectively comprising a forest over the language vocabulary. This formulation enables us to capture edgewise properties reflecting single-step morphological…
We study the problem of learning a latent tree graphical model where samples are available only from a subset of variables. We propose two consistent and computationally efficient algorithms for learning minimal latent trees, that is, trees…
We consider in this article an Elephant Random Walk evolving in the plane. Specifically, this is a reinforced stochastic process in which the $n$th step is given by a random rotation of one of the previous steps chosen uniformly at random.…
Based on a recent development in the area of error control coding, we introduce the notion of convolutional factor graphs (CFGs) as a new class of probabilistic graphical models. In this context, the conventional factor graphs are referred…
We determine the group of linear transformations on a vector space $V$ that preserve a polynomial function $f$ on $V$ for several interesting pairs $(V,f)$, using the theory of semisimple algebraic groups.
We describe several families of permutation polynomials obtained using functions with linear translators.
We study the fractional populations in chromosome inherited diseases. The governing equations for the fractional populations are found and solved in the presence of mutation and selection. The physical fixed points obtained are used to…