Related papers: Inferring an Indeterminate String from a Prefix Gr…

An integer array y = y[1..n] is said to be feasible if and only if y[1] = n and, for every i \in 2..n, i \le i+y[i] \le n+1. A string is said to be indeterminate if and only if at least one of its elements is a subset of cardinality greater…

An \emph{indeterminate string} $x = x[1..n]$ on an alphabet $\Sigma$ is a sequence of nonempty subsets of $\Sigma$; $x$ is said to be \emph{regular} if every subset is of size one. A proper substring $u$ of regular $x$ is said to be a…

In this paper we propose a new, more appropriate definition of regular and indeterminate strings. A regular string is one that is "isomorphic" to a string whose entries all consist of a single letter, but which nevertheless may itself…

A \itbf{cover} of a string $x = x[1..n]$ is a proper substring $u$ of $x$ such that $x$ can be constructed from possibly overlapping instances of $u$. A recent paper \cite{FIKPPST13} relaxes this definition --- an \itbf{enhanced cover} $u$…

Let $\Sigma$ and $\Pi$ be disjoint alphabets, respectively called the static alphabet and the parameterized alphabet. Two strings $x$ and $y$ over $\Sigma \cup \Pi$ of equal length are said to parameterized match (p-match) if there exists a…

A homogeneous set of an $n$-vertex graph is a set $X$ of vertices ($2\le |X|\le n-1$) such that every vertex not in $X$ is either complete or anticomplete to $X$. A graph is called prime if it has no homogeneous set. A chain of length $t$…

Let $\Gamma$ be a finite graph and let $\Gamma^{\mathrm{e}}$ be its extension graph. We inductively define a sequence $\{\Gamma_i\}$ of finite induced subgraphs of $\Gamma^{\mathrm{e}}$ through successive applications of an operation called…

Let $v(F)$ denote the number of vertices in a fixed connected pattern graph $F$. We show an infinite family of patterns $F$ such that the existence of a subgraph isomorphic to $F$ is expressible by a first-order sentence of quantifier depth…

The Suffix Array SA(S) of a string S[1 ... n] is an array containing all the suffixes of S sorted by lexicographic order. The suffix array is one of the most well known indexing data structures, and it functions as a key tool in many string…

A binary string $f$ is a factor of string $u$ if $f$ appears as a sequence of $|f|$ consecutive bits of $u$, where $|f|$ denotes the length of $f$. Generalized Fibonacci cube $Q_{d}(f)$ is the graph obtained from the $d$-cube $Q_{d}$ by…

Traditionally, graph algorithms get a single graph as input, and then they should decide if this graph satisfies a certain property $\Phi$. What happens if this question is modified in a way that we get a possibly infinite family of graphs…

We present IsalGraph, a method for representing the structure of any finite, simple graph as a compact string over a nine-character instruction alphabet. The encoding is executed by a small virtual machine comprising a sparse graph, a…

A planar graph is inscribable if it is combinatorial equivalent to the skeleton of a polyhedra which is inscribed in a sphere. For an inscribable graph, in its combinatorial equivalent class, if we could always find polyhedra inscribed in…

We define a suffixient set for a text $T [1..n]$ to be a set $S$ of positions between 1 and $n$ such that, for any edge descending from a node $u$ to a node $v$ in the suffix tree of $T$, there is an element $s \in S$ such that $u$'s path…

We consider mining dense substructures (maximal cliques) from an uncertain graph, which is a probability distribution on a set of deterministic graphs. For parameter 0 < {\alpha} < 1, we present a precise definition of an {\alpha}-maximal…

Fractional graph isomorphism is the linear relaxation of an integer programming formulation of graph isomorphism. It preserves some invariants of graphs, like degree sequences and equitable partitions, but it does not preserve others like…

The \emph{index set} of a computable structure $\mathcal{A}$ is the set of indices for computable copies of $\mathcal{A}$. We determine the complexity of the index sets of various mathematically interesting structures, including arbitrary…

Strings form a fundamental data type in computer systems. String searching has been extensively studied since the inception of computer science. Increasingly many applications have to deal with imprecise strings or strings with fuzzy…

While graphs and abstract data structures can be large and complex, practical instances are often regular or highly structured. If the instance has sufficient structure, we might hope to compress the object into a more succinct…

We generalize the problem of reconstructing strings from their substring compositions first introduced by Acharya et al. in 2015 motivated by polymer-based advanced data storage systems utilizing mass spectrometry. Namely, we see strings as…