Related papers: Compressed Tree Canonization
Large Language Models (LLMs) are powerful candidates for complex decision-making, leveraging vast encoded knowledge and remarkable zero-shot abilities. However, their adoption in high-stakes environments is hindered by their opacity; their…
Cartesian tree matching is the problem of finding all substrings of a given text which have the same Cartesian trees as that of a given pattern. So far there is one linear-time solution for Cartesian tree matching, which is based on the KMP…
We consider the following generalization of the binary search problem. A search strategy is required to locate an unknown target node $t$ in a given tree $T$. Upon querying a node $v$ of the tree, the strategy receives as a reply an…
We characterize the compatibility of a collection of unrooted phylogenetic trees as a question of determining whether a graph derived from these trees --- the display graph --- has a specific kind of triangulation, which we call legal. Our…
Large language models (LLMs) provide powerful means to leverage prior knowledge for predictive modeling when data is limited. In this work, we demonstrate how LLMs can use their compressed world knowledge to generate intrinsically…
2-colored best match graphs (2-BMGs) form a subclass of sink-free bi-transitive graphs that appears in phylogenetic combinatorics. There, 2-BMGs describe evolutionarily most closely related genes between a pair of species. They are…
Large language models (LM) based on Transformers allow to generate plausible long texts. In this paper, we explore how this generation can be further controlled at decoding time to satisfy certain constraints (e.g. being non-toxic,…
We prove complex contraction for zero-free regions of counting weighted set cover problem in which an element can appear in an unbounded number of sets, thus obtaining fully polynomial-time approximation schemes(FPTAS) via Barvinok's…
We present the first polynomial time algorithm to learn nontrivial classes of languages of infinite trees. Specifically, our algorithm uses membership and equivalence queries to learn classes of $\omega$-tree languages derived from weak…
In this article, we construct explicit examples of pairs of non-isomorphic trees with the same restricted $U$-polynomial for every $k$; by this we mean that the polynomials agree on terms with degree at most $k+1$. The main tool for this…
One of Courcelle's celebrated results states that if C is a class of graphs of bounded tree-width, then model-checking for monadic second order logic is fixed-parameter tractable on C by linear time parameterised algorithms. An immediate…
Combinatorial trees can be used to represent genealogies of asexual individuals. These individuals can be endowed with birth and death times, to obtain a so-called `chronological tree'. In this work, we are interested in the continuum…
We consider the satisfiability problem for the two-variable fragment of first-order logic over finite unranked trees. We work with signatures consisting of some unary predicates and the binary navigational predicates child, right sibling,…
Some posets of binary leaf-labeled trees are shown to be supersolvable lattices and explicit EL-labelings are given. Their characteristic polynomials are computed, recovering their known factorization in a different way.
A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…
Simon's factorization theorem is a celebrated tool in algebraic automata theory, providing bounded-depth decompositions of words with respect to morphisms into finite semigroups. We develop an analogue of Simon's theorem for \emph{forests}…
Decision trees (DTs) embody interpretable classifiers. DTs have been advocated for deployment in high-risk applications, but also for explaining other complex classifiers. Nevertheless, recent work has demonstrated that predictions in DTs…
Probabilistic search algorithms, such as Monte Carlo Tree Search (MCTS), have proven very effective in solving sequential decision-making tasks under uncertainty. However, interpreting asymmetric search trees that incorporate bandit-based…
Decision Trees are some of the most popular machine learning models today due to their out-of-the-box performance and interpretability. Often, Decision Trees models are constructed greedily in a top-down fashion via heuristic search…
We use the recently developed theory of forest algebras to find algebraic characterizations of the languages of unranked trees and forests definable in various logics. These include the temporal logics CTL and EF, and first-order logic over…