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Optical aberrations significantly degrade image quality in microscopy, particularly when imaging deeper into samples. These aberrations arise from distortions in the optical wavefront and can be mathematically represented using Zernike…

Computer Vision and Pattern Recognition · Computer Science 2026-05-13 Yong En Kok , Bowen Deng , Alexander Bentley , Andrew J. Parkes , Michael G. Somekh , Amanda J. Wright , Michael P. Pound

This is the documentation for Spatio-TEmporal Motor-POwered (STEMPO) phantom for dynamic X-ray tomography. Provided are different measurements designed for testing dynamic tomography reconstruction algorithms. The measured data and…

Image and Video Processing · Electrical Eng. & Systems 2025-08-05 Tommi Heikkilä

Electron tomography has been studied in various fields. Various methods have been developed to align projection sets to construct ideally focused reconstruction. In this paper, we present how to align the projection set to distinguish…

Medical Physics · Physics 2017-06-14 Dongwook Kim , Kyungtaek Jun

Magnetic vector tomography allows for visualizing the 3D magnetization vector of magnetic nanostructures and multilayers with nanometric resolution. In this work, we present MARTApp (Magnetic Analysis and Reconstruction of Tomographies…

Computed tomography has propelled scientific advances in fields from biology to materials science. This technology allows for the elucidation of 3-dimensional internal structure by the attenuation of x-rays through an object at different…

Computer Vision and Pattern Recognition · Computer Science 2022-11-02 Rey Mendoza , Minh Nguyen , Judith Weng Zhu , Vincent Dumont , Talita Perciano , Juliane Mueller , Vidya Ganapati

Iterative methods for tomographic image reconstruction have great potential for enabling high quality imaging from low-dose projection data. The computational burden of iterative reconstruction algorithms, however, has been an impediment in…

Image and Video Processing · Electrical Eng. & Systems 2019-07-25 Kai Zhang , Alireza Entezari

A Python package for the analysis of dark-field X-ray microscopy (DFXM) and rocking curve imaging (RCI) data is presented. \textit{darfix} provides a set of data processing and visualization tools that can be either imported as library…

We demonstrate a neutron tomography technique with sub-micrometer spatial resolution. Our method consists of measuring neutron diffraction spectra using a double crystal diffractometer as a function of sample rotation and then using a phase…

Instrumentation and Detectors · Physics 2020-11-13 B. Heacock , D. Sarenac , D. G. Cory , M. G. Huber , J. P. W. MacLean , H. Miao , H. Wen , D. A. Pushin

We examine data-processing of Markov chains through the lens of information geometry. We first establish a theory of congruent Markov morphisms within the framework of stochastic matrices. Specifically, we introduce and justify the concept…

Probability · Mathematics 2023-12-21 Geoffrey Wolfer , Shun Watanabe

X-ray single particle imaging involves the measurement of a large number of noisy diffraction patterns of isolated objects in random orientations. The missing information about these patterns is then computationally recovered in order to…

Image and Video Processing · Electrical Eng. & Systems 2020-05-25 Kartik Ayyer

Single-shot wide-angle diffraction imaging is a widely used method to investigate the structure of non-crystallizing objects such as nanoclusters, large proteins or even viruses. Its main advantage is that information about the…

Data Analysis, Statistics and Probability · Physics 2021-06-02 Thomas Stielow , Stefan Scheel

Limited-angle tomography is a highly ill-posed linear inverse problem. It arises in many applications, such as digital breast tomosynthesis. Reconstructions from limited-angle data typically suffer from severe stretching of features along…

Image and Video Processing · Electrical Eng. & Systems 2022-04-22 Siiri Rautio , Rashmi Murthy , Tatiana A. Bubba , Matti Lassas , Samuli Siltanen

Tomography is a widely used tool for analyzing microstructures in three dimensions (3D). The analysis, however, faces difficulty because the constituent materials produce similar grey-scale values. Sometimes, this prompts the image…

Materials Science · Physics 2021-09-28 Anand V. Patel , Tao Hou , Juan D. Beltran Rodriguez , Tamal K. Dey , Dunbar P. Birnie

We present the collections of images of the same rotating plastic object made in X-ray and visible spectra. Both parts of the dataset contain 400 images. The images are maid every 0.5 degrees of the object axial rotation. The collection of…

Image and Video Processing · Electrical Eng. & Systems 2019-10-02 Mikhail Chekanov , Oleg Shipitko

Medical imaging is limited by acquisition time and scanning equipment. CT and MR volumes, reconstructed with thicker slices, are anisotropic with high in-plane resolution and low through-plane resolution. We reveal an intriguing phenomenon…

Image and Video Processing · Electrical Eng. & Systems 2024-05-07 Haofei Song , Xintian Mao , Jing Yu , Qingli Li , Yan Wang

In nuclear arms control and disarmament processes, it is crucial to determine whether an object is a nuclear weapon or not without revealing sensitive information about it. At the MIT: Laboratory for Nuclear Security and Policy, such a…

Numerical Analysis · Mathematics 2026-03-20 Christopher Fichtlscherer , R. Scott Kemp , Christina Brandt

We investigate the inverse source problem for the wave equation, arising in photo- and thermoacoustic tomography. There exist quite a few theoretically exact inversion formulas explicitly expressing solution of this problem in terms of the…

Analysis of PDEs · Mathematics 2018-08-01 Ngoc Do , Leonid Kunyansky

Winograd convolution is widely used in deep neural networks (DNNs). Existing work for DNNs considers only the subset Winograd algorithms that are equivalent to Toom-Cook convolution. We investigate a wider range of Winograd algorithms for…

Machine Learning · Computer Science 2019-06-26 Barbara Barabasz , David Gregg

In this third part of a multi-paper series, we present quantitative image reconstruction results from aerial measurements of eight different surrogate distributed gamma-ray sources on flat terrain. We show that our quantitative imaging…

Instrumentation and Detectors · Physics 2026-03-03 Jayson R. Vavrek , Jaewon Lee , Marco Salathe , Mark S. Bandstra , Daniel Hellfeld , Brian J. Quiter , Tenzing H. Y. Joshi

We propose a practical method to calculate Zernike aberrations from analysis of a single long-exposure defocused stellar image. It consists in fitting the aberration coefficients and seeing blur directly to a realistic image binned into…

Astrophysics · Physics 2009-11-11 A. Tokovinin , S. Heathcote
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