Related papers: A Compressed-Gap Data-Aware Measure

Two recent lower bounds on the compressibility of repetitive sequences, $\delta \le \gamma$, have received much attention. It has been shown that a length-$n$ string $S$ over an alphabet of size $\sigma$ can be represented within the…

Let a text $T[1..n]$ be the only string generated by a context-free grammar with $g$ (terminal and nonterminal) symbols, and of size $G$ (measured as the sum of the lengths of the right-hand sides of the rules). Such a grammar, called a…

Given a string $S$ of $n$ integers in $[0,\sigma)$, a range minimum query RMQ$(i, j)$ asks for the index of the smallest integer in $S[i \dots j]$. It is well known that the problem can be solved with a succinct data structure of size $2n +…

The random access problem for compressed strings is to build a data structure that efficiently supports accessing the character in position $i$ of a string given in compressed form. Given a grammar of size $n$ compressing a string of size…

In the $(k,h)$-SetCover problem, we are given a collection $\mathcal{S}$ of sets over a universe $U$, and the goal is to distinguish between the case that $\mathcal{S}$ contains $k$ sets which cover $U$, from the case that at least $h$ sets…

We introduce the problem of computing a parsing where each phrase is of length at most $m$ and which minimizes the zeroth order entropy of parsing. Based on the recent theoretical results we devise a heuristic for this problem. The solution…

Unlike in statistical compression, where Shannon's entropy is a definitive lower bound, no such clear measure exists for the compressibility of repetitive sequences. Since statistical entropy does not capture repetitiveness, ad-hoc measures…

We study the support recovery problem for compressed sensing, where the goal is to reconstruct the a high-dimensional $K$-sparse signal $\mathbf{x}\in\mathbb{R}^N$, from low-dimensional linear measurements with and without noise. Our key…

We describe a data structure that supports access, rank and select queries, as well as symbol insertions and deletions, on a string $S[1,n]$ over alphabet $[1..\sigma]$ in time $O(\lg n/\lg\lg n)$, which is optimal even on binary sequences…

This thesis concerns sequential-access data compression, i.e., by algorithms that read the input one or more times from beginning to end. In one chapter we consider adaptive prefix coding, for which we must read the input character by…

The {\em wavelet tree} is a flexible data structure that permits representing sequences $S[1,n]$ of symbols over an alphabet of size $\sigma$, within compressed space and supporting a wide range of operations on $S$. When $\sigma$ is…

We propose a new succinct representation of labeled trees which represents a tree T using |T|H_k(T) number of bits (plus some smaller order terms), where |T|H_k(T) denotes the k-th order (tree label) entropy, as defined by Ferragina at al.…

We address the problem of nonparametric estimation of characteristics for stationary and ergodic time series. We consider finite-alphabet time series and real-valued ones and the following four problems: i) estimation of the (limiting)…

Visualizing high-dimensional data has been a focus in data analysis communities for decades, which has led to the design of many algorithms, some of which are now considered references (such as t-SNE for example). In our era of overwhelming…

High-energy, large-scale particle colliders in nuclear and high-energy physics generate data at extraordinary rates, reaching up to $1$ terabyte and several petabytes per second, respectively. The development of real-time, high-throughput…

The scene graph is a new data structure describing objects and their pairwise relationship within image scenes. As the size of scene graph in vision applications grows, how to losslessly and efficiently store such data on disks or transmit…

We present a new similarity measure based on information theoretic measures which is superior than Normalized Compression Distance for clustering problems and inherits the useful properties of conditional Kolmogorov complexity. We show that…

In the problem of adaptive compressed sensing, one wants to estimate an approximately $k$-sparse vector $x\in\mathbb{R}^n$ from $m$ linear measurements $A_1 x, A_2 x,\ldots, A_m x$, where $A_i$ can be chosen based on the outcomes $A_1…

For a well-studied family of domination-type problems, in bounded-treewidth graphs, we investigate whether it is possible to find faster algorithms. For sets $\sigma,\rho$ of non-negative integers, a $(\sigma,\rho)$-set of a graph $G$ is a…

In Gapped String Indexing, the goal is to compactly represent a string $S$ of length $n$ such that for any query consisting of two strings $P_1$ and $P_2$, called patterns, and an integer interval $[\alpha, \beta]$, called gap range, we can…