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Related papers: Massively Multitask Networks for Drug Discovery

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This work proposes the M3E2, a multi-task learning neural network model to estimate the effect of multiple treatments. In contrast to existing methods, M3E2 can handle multiple treatment effects applied simultaneously to the same unit,…

Machine Learning · Computer Science 2023-01-09 Raquel Aoki , Yizhou Chen , Martin Ester

In this paper, we introduce multi-task learning (MTL) to data harmonization (DH); where we aim to harmonize images across different acquisition platforms and sites. This allows us to integrate information from multiple acquisitions and…

Machine Learning · Computer Science 2019-07-29 Stefano B. Blumberg , Marco Palombo , Can Son Khoo , Chantal M. W. Tax , Ryutaro Tanno , Daniel C. Alexander

In recent years, deep neural networks have had great success in machine learning and pattern recognition. Architecture size for a neural network contributes significantly to the success of any neural network. In this study, we optimize the…

Machine Learning · Computer Science 2021-01-19 Yigit Alparslan , Ethan Jacob Moyer , Isamu Mclean Isozaki , Daniel Schwartz , Adam Dunlop , Shesh Dave , Edward Kim

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht

Transfer learning has the potential to reduce the burden of data collection and to decrease the unavoidable risks of the training phase. In this letter, we introduce a multirobot, multitask transfer learning framework that allows a system…

Robotics · Computer Science 2018-04-04 Karime Pereida , Mohamed K. Helwa , Angela P. Schoellig

Typical multi-task learning (MTL) methods rely on architectural adjustments and a large trainable parameter set to jointly optimize over several tasks. However, when the number of tasks increases so do the complexity of the architectural…

Computer Vision and Pattern Recognition · Computer Science 2019-03-29 Gjorgji Strezoski , Nanne van Noord , Marcel Worring

The modular structure of brain networks supports specialized information processing, complex dynamics, and cost-efficient spatial embedding. Inter-individual variation in modular structure has been linked to differences in performance,…

Deep learning yields great results across many fields, from speech recognition, image classification, to translation. But for each problem, getting a deep model to work well involves research into the architecture and a long period of…

Machine Learning · Computer Science 2017-06-19 Lukasz Kaiser , Aidan N. Gomez , Noam Shazeer , Ashish Vaswani , Niki Parmar , Llion Jones , Jakob Uszkoreit

Multi-task learning commonly encounters competition for resources among tasks, specifically when model capacity is limited. This challenge motivates models which allow control over the relative importance of tasks and total compute cost…

Computer Vision and Pattern Recognition · Computer Science 2022-03-29 Dripta S. Raychaudhuri , Yumin Suh , Samuel Schulter , Xiang Yu , Masoud Faraki , Amit K. Roy-Chowdhury , Manmohan Chandraker

Diseases involve complex processes and modifications to the cellular machinery. The gene expression profile of the affected cells contains characteristic patterns linked to a disease. Hence, biological knowledge pertaining to a disease can…

Quantitative Methods · Quantitative Biology 2020-04-13 Thomas Gaudelet , Noel Malod-Dognin , Jon Sanchez-Valle , Vera Pancaldi , Alfonso Valencia , Natasa Przulj

Machine learning approaches have become popular for molecular modeling tasks, including molecular force fields and properties prediction. Traditional supervised learning methods suffer from scarcity of labeled data for particular tasks,…

Chemical Physics · Physics 2022-11-29 Xiang Gao , Weihao Gao , Wenzhi Xiao , Zhirui Wang , Chong Wang , Liang Xiang

Social media has grown to be a crucial information source for pharmacovigilance studies where an increasing number of people post adverse reactions to medical drugs that are previously unreported. Aiming to effectively monitor various…

Machine Learning · Computer Science 2018-02-19 Shaika Chowdhury , Chenwei Zhang , Philip S. Yu

We develop new algorithms for simultaneous learning of multiple tasks (e.g., image classification, depth estimation), and for adapting to unseen task/domain distributions within those high-level tasks (e.g., different environments). First,…

Machine Learning · Computer Science 2020-06-16 Kiran Lekkala , Laurent Itti

Classifying network traffic is the basis for important network applications. Prior research in this area has faced challenges on the availability of representative datasets, and many of the results cannot be readily reproduced. Such a…

Machine Learning · Computer Science 2021-06-09 Onur Barut , Yan Luo , Tong Zhang , Weigang Li , Peilong Li

Group recommender systems aim to generate recommendations that align with the collective preferences of a group, introducing challenges that differ significantly from those in individual recommendation scenarios. This paper presents Joint…

Information Retrieval · Computer Science 2025-04-10 Ngoc Luyen Le , Marie-Hélène Abel

Artificial intelligence (AI) agents are emerging as transformative tools in drug discovery, with the ability to autonomously reason, act, and learn through complicated research workflows. Building on large language models (LLMs) coupled…

Chemical pretrained models, sometimes referred to as foundation models, are receiving considerable interest for drug discovery applications. The general chemical knowledge extracted from self-supervised training has the potential to improve…

Machine Learning · Computer Science 2025-10-15 Matthew Adrian , Yunsie Chung , Kevin Boyd , Saee Paliwal , Srimukh Prasad Veccham , Alan C. Cheng

We present a novel methodology to jointly perform multi-task learning and infer intrinsic relationship among tasks by an interpretable and sparse graph. Unlike existing multi-task learning methodologies, the graph structure is not assumed…

Machine Learning · Computer Science 2020-09-15 Shujian Yu , Francesco Alesiani , Ammar Shaker , Wenzhe Yin

Drug development is an expensive and time-consuming process where thousands of chemical compounds are being tested in order to find those possessing drug-like properties while being safe and effective. One of key parts of the early drug…

Quantitative Methods · Quantitative Biology 2022-02-15 Josip Mesarić

Chemical representations derived from deep learning are emerging as a powerful tool in areas such as drug discovery and materials innovation. Currently, this methodology has three major limitations - the cost of representation generation,…

Chemical Physics · Physics 2018-09-18 Clyde Fare , Lukas Turcani , Edward O. Pyzer-Knapp
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