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We numerically study a simple fluid composed of particles having a hard-core repulsion, complemented by two short-ranged attractive (sticky) spots at the particle poles, which provides a simple model for equilibrium polymerization of linear…

Soft Condensed Matter · Physics 2009-11-13 F. Sciortino , E. Bianchi , J. F. Douglas , P. Tartaglia

There are several definitions of energy density in quantum mechanics. These yield expressions that differ locally, but all satisfy a continuity equation and integrate to the value of the expected energy of the system under consideration.…

Quantum Physics · Physics 2023-06-29 Francisco Torres Arvizu , Adrian Ortega , Hernán Larralde

It is shown here that fracture after a brief plastic strain, typically of a few percents, is a necessary consequence of the polycrystalline nature of the materials. The polycrystal undergoing plastic deformation is modeled as a flowing…

Materials Science · Physics 2018-08-28 Miguel Lagos , César Retamal , Rodrigo Valle

The weighted density approximation, its implementation and its application to ferroelectric materials is discussed. Calculations are presented for several perovskite oxides and related materials. In general the weighted density…

Materials Science · Physics 2009-10-31 I. I. Mazin , D. J. Singh

The structures and electronic states in all polymorphs of poly(vinylidene fluoride) (PVDF) were calculated in various levels using the CRYSTAL software. The calculated lattice constants with PBE0/cc-pVTZ agreed well with experimental…

Materials Science · Physics 2014-05-27 Akira Itoh

In this paper, we report dynamic Monte Carlo simulations of melting and crystallization in a single-chain system. Their free energy barriers are calculated by the umbrella sampling method and can be described well by a simple expression…

Soft Condensed Matter · Physics 2007-05-23 Wenbing Hu , Daan Frenkel , Vincent B. F. Mathot

Density functional theory (DFT) embedding provides a formally exact framework for interfacing correlated wave-function theory (WFT) methods with lower-level descriptions of electronic structure. Here, we report techniques to improve the…

Chemical Physics · Physics 2015-06-12 Jason D. Goodpaster , Taylor A. Barnes , Frederick R. Manby , Thomas F. Miller

The surface freezing and surface melting transitions exhibited by a model two-dimensional soft matter system is studied. The behaviour when confined within a wedge is also considered. The system consists of particles interacting via a soft…

Soft Condensed Matter · Physics 2016-05-25 Andrew J. Archer , Alexandr Malijevsky

Altering chemical reactivity and material structure in confined optical environments is on the rise, and yet, a conclusive understanding of the microscopic mechanisms remains elusive. This originates mostly from the fact that accurately…

Chemical Physics · Physics 2024-03-22 Christian Schäfer , Jakub Fojt , Eric Lindgren , Paul Erhart

The isothermal compressibility of a general crystal is derived and discussed within (classical) density functional theory. Starting from the microscopic particle density, we carefully coarse grain to obtain the thermodynamic compressibility…

Soft Condensed Matter · Physics 2015-07-30 Christof Walz , Grzegorz Szamel , Matthias Fuchs

The scaled particle theory is applied to a description of thermodynamic properties of one-dimensional hard rod fluid in disordered porous media. To this end, we extended the SPT2 approach, which had been developed previously. Analytical…

Soft Condensed Matter · Physics 2012-07-13 M. Holovko , T. Patsahan , W. Dong

We present a new simulation method to calculate the free energy and the chemical potential of hard particle systems. The method relies on the introduction of a parameter dependent potential to smoothly transform between the hard particle…

Chemical Physics · Physics 2015-05-30 Hitomi Nomura , Tomonori Koda , Akihiro Nishioka , Ken Miyata

Kinetic barriers cause polymers to crystallize incompletely, into nanoscale lamellae interleaved with amorphous regions. As a result, crystalline polymers are full of crystal-melt interfaces, which dominate their physical properties. The…

Soft Condensed Matter · Physics 2010-09-23 Scott T. Milner

Advancements in the synthesis of faceted nanoparticles and colloids have spurred interest in the phase behavior of polyhedral shapes. Regular tetrahedra have attracted particular attention because they prefer local symmetries that are…

Soft Condensed Matter · Physics 2011-11-24 Amir Haji-Akbari , Michael Engel , Sharon C. Glotzer

A method is formulated, based on combining self-consistent field theory with dynamically corrected transition state theory, for estimating the rates of adsorption and desorption of end-constrained chains (e.g. by crosslinks or…

Soft Condensed Matter · Physics 2015-02-23 Doros N. Theodorou , Georgios G. Vogiatzis , Georgios Kritikos

This chapter discusses how the PLUMED plugin for molecular dynamics can be used to analyze and bias molecular dynamics trajectories. The chapter begins by introducing the notion of a collective variable and by then explaining how the free…

Computational Physics · Physics 2019-11-19 Giovanni Bussi , Gareth A. Tribello

Recently, nanofluidics experiments have been used to characterize the behavior of single DNA molecules confined to narrow slits etched with arrays of nanopits. Analysis of the experimental data relies on analytical estimates of the…

Soft Condensed Matter · Physics 2024-09-09 James M. Polson , Matthew Kozma

A stochastic PDE, describing mesoscopic fluctuations in systems of weakly interacting inertial particles of finite volume, is proposed and analysed in any finite dimension $d\in\mathbb{N}$. It is a regularised and inertial version of the…

Analysis of PDEs · Mathematics 2021-02-10 Federico Cornalba , Tony Shardlow , Johannes Zimmer

The organization of water molecules and ions between charged mineral surfaces determines the stability of colloidal suspensions and the strength of phase-separated particulate gels. In this article we assemble a density functional that…

Soft Condensed Matter · Physics 2024-05-15 Thomas Petersen

Wet particle separation is widely used in mineral processing and plastic recycling to separate mixtures of particulate materials into further usable fractions due to density differences. This work presents efforts aiming to numerically…

Fluid Dynamics · Physics 2017-07-28 Darius Markauskas , Harald Kruggel-Emden