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This paper uses combinatorics and group theory to answer questions about the assembly of icosahedral viral shells. Although the geometric structure of the capsid (shell) is fairly well understood in terms of its constituent subunits, the…

Combinatorics · Mathematics 2009-06-02 Miklos Bona , Meera Sitharam , Andrew Vince

We consider the problem of translating between irreducible closed sets and implicational bases in closure systems. To date, the complexity status of this problem is widely open, and it is further known to generalize the notorious hypergraph…

Data Structures and Algorithms · Computer Science 2025-11-04 Oscar Defrain , Arthur Ohana , Simon Vilmin

Development combines three basic processes asymmetric --- cell division, signaling and gene regulation --- in a multitude of ways to create an overwhelming diversity of multicellular life-forms. Here, we attempt to chart this diversity…

Molecular Networks · Quantitative Biology 2020-01-01 Somya Mani , Tsvi Tlusty

We prove a Matrix-Tree Theorem enumerating the spanning trees of a cell complex in terms of the eigenvalues of its cellular Laplacian operators, generalizing a previous result for simplicial complexes. As an application, we obtain explicit…

Combinatorics · Mathematics 2011-10-05 Art M. Duval , Caroline J. Klivans , Jeremy L. Martin

We consider infinite connected quasi-transitive locally finite graphs and show that every such graph with more than one end is a tree amalgamation of two other such graphs. This can be seen as a graph-theoretical version of Stallings'…

Combinatorics · Mathematics 2019-06-19 Matthias Hamann , Florian Lehner , Babak Miraftab , Tim Rühmann

A certain squarefree monomial ideal $H_P$ arising from a finite partially ordered set $P$ will be studied from viewpoints of both commutative algebra and combinatorics. First, it is proved that the defining ideal of the Rees algebra of…

Commutative Algebra · Mathematics 2007-05-23 Juergen Herzog , Takayuki Hibi

We give a parity reversing involution on noncrossing trees that leads to a combinatorial interpretation of a formula on noncrossing trees and symmetric ternary trees in answer to a problem proposed by Hough. We use the representation of…

Combinatorics · Mathematics 2007-05-23 William Y. C. Chen , Sherry H. F. Yan

Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…

Probability · Mathematics 2023-01-10 François Bienvenu , Amaury Lambert , Mike Steel

In this paper, we investigate the problem of generating the spanning trees of a graph $G$ up to the automorphisms or "symmetries" of $G$. After introducing and surveying this problem for general input graphs, we present algorithms that…

Data Structures and Algorithms · Computer Science 2025-08-20 Mithra Karamchedu , Lucas Bang

Simple drawings are drawings of graphs in which any two edges intersect at most once (either at a common endpoint or a proper crossing), and no edge intersects itself. We analyze several characteristics of simple drawings of complete…

Computational Geometry · Computer Science 2023-08-22 Oswin Aichholzer , Birgit Vogtenhuber , Alexandra Weinberger

This paper proposes a novel representation of decomposable graphs based on semi-latent tree-dependent bipartite graphs. The novel representation has two main benefits. First, it enables a form of sub-clustering within maximal cliques of the…

Methodology · Statistics 2017-12-05 Mohamad Elmasri

In this paper, we are concerned about the qualitative behavior of planar Filippov systems around some typical invariant sets, namely, polycycles. In the smooth context, a polycycle is a simple closed curve composed by a collection of…

Dynamical Systems · Mathematics 2023-07-03 Kamila S. Andrade , Otávio M. L. Gomide , Douglas D. Novaes

In this paper, we study the lattice properties of posets of torsion pairs in the module category of a family of representation-finite gentle algebras called tiling algebras, introduced by Coelho Simoes and Parsons. We present a…

Representation Theory · Mathematics 2016-09-13 Alexander Garver , Thomas McConville

Majority bootstrap percolation is a model of infection spreading in networks. Starting with a set of initially infected vertices, new vertices become infected once half of their neighbours are infected. Balogh, Bollob\'{a}s and Morris…

Combinatorics · Mathematics 2025-07-10 Maurício Collares , Joshua Erde , Anna Geisler , Mihyun Kang

Alexander duality has, in the past, made its way into commutative algebra through Stanley-Reisner rings of simplicial complexes. This has the disadvantage that one is limited to squarefree monomial ideals. The notion of Alexander duality is…

Commutative Algebra · Mathematics 2007-05-23 Ezra Miller

Experimentally observed complex networks are often scale-free, small-world and have unexpectedly large number of small cycles. Apollonian network is one notable example of a model network respecting simultaneously having all three of these…

Statistical Mechanics · Physics 2021-06-03 M. V. Tamm , D. G. Koval , V. I. Stadnichuk

We consider the polyhedral properties of two spanning tree problems with additional constraints. In the first problem, it is required to find a tree with a minimum sum of edge weights among all spanning trees with the number of leaves less…

Combinatorics · Mathematics 2018-02-16 Vladimir Bondarenko , Andrei Nikolaev , Dzhambolet Shovgenov

We consider the probability that a spanning tree chosen uniformly at random from a graph can be partitioned into a fixed number $k$ of trees of equal size by removing $k-1$ edges. In that case, the spanning tree is called {\em splittable}.…

Data Structures and Algorithms · Computer Science 2026-02-25 David Gillman , Jacob Platnick , Dana Randall

A graph $G$ is said to be a `set graph' if it admits an acyclic orientation that is also `extensional', in the sense that the out-neighborhoods of its vertices are pairwise distinct. Equivalently, a set graph is the underlying graph of the…

Discrete Mathematics · Computer Science 2015-03-20 Martin Milanič , Romeo Rizzi , Alexandru I. Tomescu

Spectral clustering views the similarity matrix as a weighted graph, and partitions the data by minimizing a graph-cut loss. Since it minimizes the across-cluster similarity, there is no need to model the distribution within each cluster.…

Methodology · Statistics 2023-04-14 Leo L. Duan , Arkaprava Roy
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