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Early hardware limitations of GPU (lack of synchronization primitives and limited memory caching mechanisms) can make GPU-based computation inefficient. Now Bio-technologies bring more chances to Bioinformatics and Biological Engineering.…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-10-29 YuKun Zhong , BaoQiu Wang , JianBiao Lin , Chen Tao , Che Nian , Xie Wen

Parallel algorithms on CPU and GPU are implemented for the Unified Gas-Kinetic Scheme and their performances are investigated and compared by a two dimensional channel flow case. The parallel CPU algorithm has a one dimensional block…

Computational Physics · Physics 2018-11-02 Jizhou Liu , Fang Q. Hu , Xiaodong Li

In this paper, we explore the limits of graphics processors (GPUs) for general purpose parallel computing by studying problems that require highly irregular data access patterns: parallel graph algorithms for list ranking and connected…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-02-25 Frank Dehne , Kumanan Yogaratnam

Many-particle continuous-time quantum walks (CTQWs) represent a resource for several tasks in quantum technology, including quantum search algorithms and universal quantum computation. In order to design and implement CTQWs in a realistic…

Quantum Physics · Physics 2017-10-02 Enrico Piccinini , Claudia Benedetti , Ilaria Siloi , Matteo G. A. Paris , Paolo Bordone

It is often difficult to write code that you can ensure will be executed in the right order when programing for parallel compute tasks. Due to the way that today's parallel compute hardware, primarily Graphical Processing Units (GPUs),…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-13 Andrew Osterhout , Ganesh Gopalakrishnan

Hyperdimensional computing (HD) is an emerging paradigm for machine learning based on the evidence that the brain computes on high-dimensional, distributed, representations of data. The main operation of HD is encoding, which transfers the…

Machine Learning · Computer Science 2020-07-22 Behnam Khaleghi , Sahand Salamat , Anthony Thomas , Fatemeh Asgarinejad , Yeseong Kim , Tajana Rosing

We equip dynamic geometry software (DGS) with a user-friendly method that enables massively parallel calculations on the graphics processing unit (GPU). This interplay of DGS and GPU opens up various applications in education and…

Mathematical Software · Computer Science 2018-08-15 Aaron Montag , Jürgen Richter-Gebert

Matrix-accelerated stencil computation is a hot research topic, yet its application to three-dimensional (3D) high-order stencils and HPC remains underexplored. With the emergence of matrix units on multicore CPUs, we analyze matrix-based…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-16 Yinuo Wang , Tianqi Mao , Lin Gan , Wubing Wan , Zeyu Song , Jiayu Fu , Lanke He , Wenqiang Wang , Zekun Yin , Wei Xue , Guangwen Yang

General Purpose Graphics Processing Unit (GPGPU) computing plays a transformative role in deep learning and machine learning by leveraging the computational advantages of parallel processing. Through the power of Compute Unified Device…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-20 Ming Li , Ziqian Bi , Tianyang Wang , Yizhu Wen , Qian Niu , Xinyuan Song , Zekun Jiang , Junyu Liu , Benji Peng , Sen Zhang , Xuanhe Pan , Jiawei Xu , Jinlang Wang , Keyu Chen , Caitlyn Heqi Yin , Pohsun Feng , Ming Liu

Utilizing GPUs is critical for high performance on heterogeneous systems. However, leveraging the full potential of GPUs for accelerating legacy CPU applications can be a challenging task for developers. The porting process requires…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-27 Shilei Tian , Tom Scogland , Barbara Chapman , Johannes Doerfert

Graphics Processing Units (GPUs) and other parallel devices are widely available and have the potential for accelerating a wide class of algorithms. However, expert programming skills are required to achieving maximum performance. hese…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-10-24 Robert Atkey , Michel Steuwer , Sam Lindley , Christophe Dubach

The convex hull is a fundamental geometrical structure for many applications where groups of points must be enclosed or represented by a convex polygon. Although efficient sequential convex hull algorithms exist, and are constantly being…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-27 Alan Keith , Héctor Ferrada , Cristóbal A. Navarro

Speculative decoding enhances the inference efficiency of large language models (LLMs) by generating drafts using a small draft language model (DLM) and verifying them in batches with a large target language model (TLM). However, adaptive…

Hardware Architecture · Computer Science 2026-05-01 Ma Zirui , Fan Zhihua , Li Wenxing , Wu Haibin , Zhang Fulin , Ye Xiaochun , Li Wenming

The modern trend in High-Performance Computing (HPC) involves the use of accelerators such as Graphics Processing Units (GPUs) alongside Central Processing Units (CPUs) to speed up numerical operations in various applications. Leading…

Mathematical Software · Computer Science 2025-07-25 Giulio Malenza , Giovanni Stabile , Filippo Spiga , Robert Birke , Marco Aldinucci

Multigrid solvers are the standard in modern scientific computing simulations. Domain Decomposition Aggregation-Based Algebraic Multigrid, also known as the DD-$\alpha$AMG solver, is a successful realization of an algebraic multigrid solver…

High Energy Physics - Lattice · Physics 2025-08-21 Gustavo Ramirez-Hidalgo , Lianhua He , Ke-Long Zhang

Image Processing is a specialized area of Digital Signal Processing which contains various mathematical and algebraic operations such as matrix inversion, transpose of matrix, derivative, convolution, Fourier Transform etc. Operations like…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-24 Batuhan Hangün , Önder Eyecioğlu

Graphics Processing Units (GPUs) are being used in many areas of physics, since the performance versus cost is very attractive. The GPUs can be addressed by CUDA which is a NVIDIA's parallel computing architecture. It enables dramatic…

High Energy Physics - Lattice · Physics 2012-10-12 Nuno Cardoso , Marco Cardoso , Pedro Bicudo

Graphics Processing Units (GPUs) are having a transformational effect on numerical lattice quantum chromodynamics (LQCD) calculations of importance in nuclear and particle physics. The QUDA library provides a package of mixed precision…

High Energy Physics - Lattice · Physics 2010-12-06 Ronald Babich , Michael A. Clark , Bálint Joó

Multiple matching algorithms are used to locate the occurrences of patterns from a finite pattern set in a large input string. Aho-Corasick and Wu-Manber, two of the most well known algorithms for multiple matching require an increased…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-07-11 Charalampos S. Kouzinopoulos , John-Alexander M. Assael , Themistoklis K. Pyrgiotis , Konstantinos G. Margaritis

Software Defined Radio (SDR) platforms are useful tools to design new wireless technologies or to improve specifications of existing ones. The IEEE 802.11p is the de-facto standard for Wireless Vehicular Ad-hoc NETworks (VANETs). It has…

Signal Processing · Electrical Eng. & Systems 2020-03-25 Rafik Zitouni , Hacene Bouaroua , Benaoumeur Senouci