Related papers: Permutation Reconstruction from MinMax-Betweenness…
Permutation patterns and pattern avoidance have been intensively studied in combinatorics and computer science, going back at least to the seminal work of Knuth on stack-sorting (1968). Perhaps the most natural algorithmic question in this…
The problem is related to all-or-nothing transforms (AONT) suggested by Rivest as a preprocessing for encrypting data with a block cipher. Since then there have been various applications of AONTs in cryptography and security. D'Arco,…
The problem of string reconstruction based on its substrings spectrum has received significant attention recently due to its applicability to DNA data storage and sequencing. In contrast to previous works, we consider in this paper a setup…
In this thesis, we introduced and carried out a combinatorial study of permutations that avoid one or two patterns of length 3 according to the statistic number of crossings. For this purpose, we manipulated a bijection of Elizalde and Pak…
In the usual trace reconstruction problem, the goal is to exactly reconstruct an unknown string of length $n$ after it passes through a deletion channel many times independently, producing a set of traces (i.e., random subsequences of the…
A composition of a nonnegative integer (n) is a sequence of positive integers whose sum is (n). A composition is palindromic if it is unchanged when its terms are read in reverse order. We provide a generating function for the number of…
This paper studies the problem of encoding messages into sequences which can be uniquely recovered from some noisy observations about their substrings. The observed reads comprise consecutive substrings with some given minimum overlap. This…
The Restricted Invertibility problem is the problem of selecting the largest subset of columns of a given matrix $X$, while keeping the smallest singular value of the extracted submatrix above a certain threshold. In this paper, we address…
Limited magnitude asymmetric error model is well suited for flash memory. In this paper, we consider the construction of asymmetric codes correcting single error over $\mathbb{Z}_{2^{k}r}$ and which are based on so called $B_{1}[4](2^{k}r)$…
The {\em shortest common superstring} and the {\em shortest common supersequence} are two well studied problems having a wide range of applications. In this paper we consider both problems with resource constraints, denoted as the…
We solve two related extremal problems in the theory of permutations. A set $Q$ of permutations of the integers 1 to $n$ is inversion-complete (resp., pair-complete) if for every inversion $(j,i)$, where $1 \le i \textless{} j \le n$,…
A variant of the classical optimal transportation problem is: among all joint measures with fixed marginals and which are dominated by a given density, find the optimal one. Existence and uniqueness of solutions to this variant were…
We study permutation (jumbled/Abelian) pattern matching over a general alphabet $\Sigma$. Given a pattern P of length m and a text T of length n, the classical task is to decide whether T contains a length-m substring whose Parikh vector…
The paper describes a general glance to the use of element exchange techniques for optimization over permutations. A multi-level description of problems is proposed which is a fundamental to understand nature and complexity of optimization…
The degree-constrained subgraph problem asks for a subgraph of a given graph such that the degree of each vertex is within some specified bounds. We study the following reconfiguration variant of this problem: Given two solutions to a…
We present a note on the implementation and efficacy of a box-constrained $L_1/L_2$ regularization in numerical optimization approaches to performing tomographic reconstruction from a single projection view. The constrained $L_1/L_2$…
A permutation array(or code) of length $n$ and distance $d$, denoted by $(n,d)$ PA, is a set of permutations $C$ from some fixed set of $n$ elements such that the Hamming distance between distinct members $\mathbf{x},\mathbf{y}\in C$ is at…
Reduction of combinatorial filters involves compressing state representations that robots use. Such optimization arises in automating the construction of minimalist robots. But exact combinatorial filter reduction is an NP-complete problem…
Let T_k^m={\sigma \in S_k | \sigma_1=m}. We prove that the number of permutations which avoid all patterns in T_k^m equals (k-2)!(k-1)^{n+1-k} for k <= n. We then prove that for any \tau in T_k^1 (or any \tau in T_k^k), the number of…
We address the problem of finding the minimum decomposition of a permutation in terms of transpositions with non-uniform cost. For arbitrary non-negative cost functions, we describe polynomial-time, constant-approximation decomposition…