Related papers: Permutation Reconstruction from MinMax-Betweenness…
We study the reconstruction problem of permutation sequences from their $k$-minors, which are subsequences of length $k$ with entries renumbered by $1,2,\ldots,k$ preserving order. We prove that the minimum number $k$ such that any…
The reconstruction problem for permutations on $n$ elements from their erroneous patterns which are distorted by transpositions is presented in this paper. It is shown that for any $n \geq 3$ an unknown permutation is uniquely…
In this note, we consider the problem of finding a step-by-step transformation between two longest increasing subsequences in a sequence, namely Longest Increasing Subsequence Reconfiguration. We give a polynomial-time algorithm for…
Motivated by mass-spectrometry protein sequencing, we consider a simply-stated problem of reconstructing a string from the multiset of its substring compositions. We show that all strings of length 7, one less than a prime, or one less than…
We present a recursive construction of a (2t + 1)-wise uniform set of permutations on 2n objects using a (2t + 1) - (2n, n, \cdot) combinatorial design, a t-wise uniform set of permutations on n objects and a (2t+1)-wise uniform set of…
The problem of storing permutations in a distributed manner arises in several common scenarios, such as efficient updates of a large, encrypted, or compressed data set. This problem may be addressed in either a combinatorial or a coding…
The sequence reconstruction problem asks for the recovery of a sequence from multiple noisy copies, where each copy may contain up to $r$ errors. In the case of permutations on \(n\) letters under the Hamming metric, this problem is closely…
We consider the problem of finding the set of permutations $r_j$ of $\{1,\cdots , n\}$ such that $\sum_{i=1}^n \prod_{j=1}^k r_j(i)$ is maximized or minimized. While the set of permutations maximizing this value are easily determined,…
Permutations are usually enumerated by size, but new results can be found by enumerating them by inversions instead, in which case one must restrict one's attention to indecomposable permutations. In the style of the seminal paper by Simion…
The present paper deals with the discrete inverse problem of reconstructing binary matrices from their row and column sums under additional constraints on the number and pattern of entries in specified minors. While the classical…
Motivated by applications in polymer-based data storage, we study the problem of reconstructing a string from part of its composition multiset. We give a full description of the structure of the strings that cannot be uniquely reconstructed…
The problem of reconstructing a sequence from the set of its length-$k$ substrings has received considerable attention due to its various applications in genomics. We study an uncoded version of this problem where multiple random sources…
We study ordinal embedding relaxations in the realm of parameterized complexity. We prove the existence of a quadratic kernel for the {\sc Betweenness} problem parameterized above its tight lower bound, which is stated as follows. For a set…
In this note we continue the analysis of permutations that avoid substrings j(j+k), 1 <= j <= n-k, k < n, as well as substrings j(j+k) (mod n), 1 <= j <= n. In the first case the number of such permutations can be obtained from recursions…
The problem of string reconstruction from substring information has found many applications due to its relevance in DNA- and polymer-based data storage. One practically important and challenging paradigm requires reconstructing mixtures of…
We examine the open problem of finding the shortest string that contains each of the n! permutations of n symbols as contiguous substrings (i.e., the shortest superpermutation on n symbols). It has been conjectured that the shortest…
In this paper, a method to generate permutations of a string under a set of constraints decided by the user is presented. The required permutations are generated without generating all the permutations.
A wide range of applications, most notably in comparative genomics, involve the computation of a shortest sorting sequence of operations for a given permutation, where the set of allowed operations is fixed beforehand. Such sequences are…
Define $S_n^k(T)$ to be the set of permutations of $\{1,2,...,n\}$ with exactly $k$ fixed points which avoid all patterns in $T \subseteq S_m$. We enumerate $S_n^k(T)$, $T \subseteq S_3$, for all $|T| \geq 2$ and $0 \leq k \leq n$.
We study error-correcting codes in the space $\mathcal{S}_{n,q}$ of length-$n$ multisets over a $q$-ary alphabet, motivated by permutation channels in which ordering is completely lost and errors act solely by deletions of symbols, i.e., by…