Related papers: Run-Length Encoded Nondeterministic KMP and Suffix…
The Hamming distance is ubiquitous in computing. Its computation gets expensive when one needs to compare a string against many strings. Quantum computers (QCs) may speed up the comparison. In this paper, we extend an existing algorithm for…
Dynamic Time Warping (DTW) is a widely used similarity measure for comparing strings that encode time series data, with applications to areas including bioinformatics, signature verification, and speech recognition. The standard…
Let $\mathcal{P}(\Sigma^*)$ be the semiring of languages, and consider its subset $\mathcal{P}(\Sigma)$. In this paper we define the language recognized by a weighted automaton over $\mathcal{P}(\Sigma)$ and a one-letter alphabet.…
Nonuniform families of polynomial-size finite automata and pushdown automata respectively have strong connections to nonuniform-NL and nonuniform-LOGCFL. We examine the behaviors of unambiguous and co-nondeterministic computations produced…
In this paper, a fully compressed pattern matching problem is studied. The compression is represented by straight-line programs (SLPs), i.e. a context-free grammars generating exactly one string; the term fully means that both the pattern…
The observed frequency of the longest proper prefix, the longest proper suffix, and the longest infix of a word $w$ in a given sequence $x$ can be used for classifying $w$ as avoided or overabundant. The definitions used for the expectation…
We show that the number of distinct squares in a packed string of length $n$ over an alphabet of size $\sigma$ can be computed in $O(n/\log_\sigma n)$ time in the word-RAM model. This paper is the first to introduce a sublinear-time…
In the present paper, we study the match test for extended regular expressions. We approach this NP-complete problem by introducing a novel variant of two-way multihead automata, which reveals that the complexity of the match test is…
Indexing highly repetitive texts - such as genomic databases, software repositories and versioned text collections - has become an important problem since the turn of the millennium. A relevant compressibility measure for repetitive texts…
Matching statistics were introduced to solve the approximate string matching problem, which is a recurrent subroutine in bioinformatics applications. In 2010, Ohlebusch et al. [SPIRE 2010] proposed a time and space efficient algorithm for…
Decidability of the determinization problem for weighted automata over the semiring $(\mathbb{Z} \cup {-\infty}, \max, +)$, WA for short, is a long-standing open question. We propose two ways of approaching it by constraining the search…
In this paper, we consider block languages, namely sets of words having the same length, and we propose a new representation for these languages. In particular, given an alphabet of size $k$ and a length $\ell$, a block language can be…
Automata play important roles in wide area of computing and the growth of multicores calls for their efficient parallel implementation. Though it is known in theory that we can perform the computation of a finite automaton in parallel by…
We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…
Let $\Sigma$ and $\Pi$ be disjoint alphabets of respective size $\sigma$ and $\pi$. Two strings over $\Sigma \cup \Pi$ of equal length are said to parameterized match (p-match) if there is a bijection $f:\Sigma \cup \Pi \rightarrow \Sigma…
The ambiguity of a nondeterministic finite automaton (NFA) N for input size n is the maximal number of accepting computations of N for an input of size n. For all k, r 2 N we construct languages Lr,k which can be recognized by NFA's with…
Regular expression matching is essential for many applications, such as finding patterns in text, exploring substrings in large DNA sequences, or lexical analysis. However, sequential regular expression matching may be time-prohibitive for…
Run Length Encoding(RLE) is one of the oldest algorithms for data-compression available, a method used for compression of large data into smaller and therefore more compact data. It compresses by looking at the data for repetitions of the…
The quantum analogues of classical variable-length codes are indeterminate-length quantum codes, in which codewords may exist in superpositions of different lengths. This paper explores some of their properties. The length observable for…
We give an unique string representation, up to isomorphism, for initially connected deterministic finite automata (ICDFAs) with n states over an alphabet of k symbols. We show how to generate all these strings for each n and k, and how its…