Related papers: Edit Distance Cannot Be Computed in Strongly Subqu…
The problem of finding \emph{distance} between \emph{pattern} of length $m$ and \emph{text} of length $n$ is a typical way of generalizing pattern matching to incorporate dissimilarity score. For both Hamming and $L_1$ distances only a…
In a way similar to the string-to-string correction problem we address time series similarity in the light of a time-series-to-time-series-correction problem for which the similarity between two time series is measured as the minimum cost…
The edit distance between two graphs on the same labeled vertex set is defined to be the size of the symmetric difference of the edge sets. The edit distance function of a hereditary property $\mathcal{H}$ is a function of $p\in [0,1]$ that…
This paper is concerned with practical implementations of approximate string dictionaries that allow edit errors. In this problem, we have as input a dictionary $D$ of $d$ strings of total length $n$ over an alphabet of size $\sigma$. Given…
The Fr\'echet distance is a similarity measure between two curves $A$ and $B$: Informally, it is the minimum length of a leash required to connect a dog, constrained to be on $A$, and its owner, constrained to be on $B$, as they walk…
We consider the approximate pattern matching problem under the edit distance. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to find the starting positions of all substrings of $T$ that can be…
We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…
All known algorithms for the Fr\'echet distance between curves proceed in two steps: first, they construct an efficient oracle for the decision version; second, they use this oracle to find the optimum from a finite set of critical values.…
Let $m$ and $n$ be the numbers of vertices of two polygonal curves in $\mathbb{R}^d$ for any fixed $d$ such that $m \leq n$. Since it was known in 1995 how to compute the Fr\'{e}chet distance of these two curves in $O(mn\log (mn))$ time, it…
The deletion distance between two binary words $u,v \in \{0,1\}^n$ is the smallest $k$ such that $u$ and $v$ share a common subsequence of length $n-k$. A set $C$ of binary words of length $n$ is called a $k$-deletion code if every pair of…
In this paper we provide a new locally consistent decomposition of strings. Each string $x$ is decomposed into blocks that can be described by grammars of size $\widetilde{O}(k)$ (using some amount of randomness). If we take two strings $x$…
Let $W$ be a string of length $n$ over an alphabet $\Sigma$, $k$ be a positive integer, and $\mathcal{S}$ be a set of length-$k$ substrings of $W$. The ETFS problem asks us to construct a string $X_{\mathrm{ED}}$ such that: (i) no string of…
Given an LZW/LZ78 compressed text, we want to find an approximate occurrence of a given pattern of length m. The goal is to achieve time complexity depending on the size n of the compressed representation of the text instead of its length.…
The edit distance between two graphs is a widely used measure of similarity that evaluates the smallest number of vertex and edge deletions/insertions required to transform one graph to another. It is NP-hard to compute in general, and a…
The Earth Mover Distance (EMD) between two sets of points $A, B \subseteq \mathbb{R}^d$ with $|A| = |B|$ is the minimum total Euclidean distance of any perfect matching between $A$ and $B$. One of its generalizations is asymmetric EMD,…
The edit distance between two graphs on the same vertex set is defined to be size of the symmetric difference of their edge sets. The edit distance function of a hereditary property, $\mathcal{H}$, is a function of $p$ and measures,…
Dot plots are a standard method for local comparison of biological sequences. In a dot plot, a substring to substring distance is computed for all pairs of fixed-size windows in the input strings. Commonly, the Hamming distance is used…
We give an $\tilde O(n^2)$ time algorithm for computing the exact Dynamic Time Warping distance between two strings whose run-length encoding is of size at most $n$. This matches (up to log factors) the known (conditional) lower bound, and…
In the trace reconstruction problem, one observes the output of passing a binary string $s \in \{0,1\}^n$ through a deletion channel $T$ times and wishes to recover $s$ from the resulting $T$ "traces." Most of the literature has focused on…
Approximate string matching is the problem of finding all factors of a text t of length n that are at a distance at most k from a pattern x of length m. Approximate circular string matching is the problem of finding all factors of t that…