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MRI-based medical imaging has become indispensable in modern clinical diagnosis, particularly for brain tumor detection. However, the rapid growth in data volume poses challenges for conventional diagnostic approaches. Although deep…

Computer Vision and Pattern Recognition · Computer Science 2026-03-31 Hayder Saad Abdulbaqi , Mohammed Hadi Rahim , Mohammed Hassan Hadi , Haider Ali Aboud , Ali Hussein Allawi

RISC-V ISA-based processors have recently emerged as both powerful and energy-efficient computing platforms. The release of the MILK-V Pioneer marked a significant milestone as the first desktop-grade RISC-V system. With increasing…

In this paper, we discuss the need for an integrated software stack that unites artificial intelligence (AI) and modeling and simulation (ModSim) tools to advance scientific discovery. The authors advocate for a unified AI/ModSim software…

Software Engineering · Computer Science 2024-11-15 Michael A. Heroux , Sameer Shende , Lois Curfman McInnes , Todd Gamblin , James M. Willenbring

Microbiome studies have recently transitioned from experimental designs with a few hundred samples to designs spanning tens of thousands of samples. Modern studies such as the Earth Microbiome Project (EMP) afford the statistics crucial for…

Genomics · Quantitative Biology 2021-11-02 Igor Sfiligoi , Daniel McDonald , Rob Knight

We present a fully modular and scalable software pipeline for processing electron microscope (EM) images of brain slices into 3D visualization of individual neurons and demonstrate an end-to-end segmentation of a large EM volume using a…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-20 Rafael Vescovi , Hanyu Li , Jeffery Kinnison , Murat Keceli , Misha Salim , Narayanan Kasthuri , Thomas D. Uram , Nicola Ferrier

ScopeSim is a flexible multipurpose instrument data simulation framework built in Python. It enables both raw and reduced observation data to be simulated for a wide range of telescopes and instruments quickly and efficiently on a personal…

Instrumentation and Methods for Astrophysics · Physics 2021-09-29 Kieran Leschinski , Hugo Buddelmeijer , Oliver Czoske , Miguel Verdugo , Gijs Verdoes-Kleijn , Werner Zeilinger

In recent years, quantum Ising machines have drawn a lot of attention, but due to physical implementation constraints, it has been difficult to achieve dense coupling, such as full coupling with sufficient spins to handle practical…

Neuromorphic chip refers to an unconventional computing architecture that is modelled on biological brains. It is ideally suited for processing sensory data for intelligence computing, decision-making or context cognition. Despite rapid…

Emerging Technologies · Computer Science 2016-09-09 Shuchao Qin , Fengqiu Wang , Yujie Liu , Qing Wan , Xinran Wang , Yongbing Xu , Yi Shi , Xiaomu Wang , Rong Zhang

The analysis of the evolutionary dynamics of a population with many polymorphic loci is challenging since a large number of possible genotypes needs to be tracked. In the absence of analytical solutions, forward computer simulations are an…

Populations and Evolution · Quantitative Biology 2012-07-31 Fabio Zanini , Richard A. Neher

Recent advances in memory technologies, devices and materials have shown great potential for integration into neuromorphic electronic systems. However, a significant gap remains between the development of these materials and the realization…

Acellular slime mould Physarum polycephalum is a monstrously large single cell visible by an unaided eye. It shows sophisticated behavioural traits in foraging for nutrients and developing an optimal transport network of protoplasmic tubes…

Pattern Formation and Solitons · Physics 2013-05-17 Andrew Adamatzky

We present FabSim, a toolkit developed to simplify a range of computational tasks for researchers in diverse disciplines. FabSim is flexible, adaptable, and allows users to perform a wide range of tasks with ease. It also provides a…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-09-21 Derek Groen , Agastya Bhati , James Suter , James Hetherington , Stefan Zasada , Peter Coveney

P-systems are abstract computational models inspired by the phospholipid bilayer membranes generated by biological cells. Illustrated here is a mechanism by which recursive liposome structures (multivesicular liposomes) may be…

Emerging Technologies · Computer Science 2019-05-14 Richard Mayne , Neil Phillips , Andrew Adamatzky

At present, analytical lab-on-chip devices find their usage in different facets of chemical analysis, biological analysis, point of care analysis, biosensors, etc. In addition, graphene has already established itself as an essential…

Applied Physics · Physics 2022-04-13 Joydip Sengupta , Chaudhery Mustansar Hussain

Federated Learning (FL) has undergone significant development since its inception in 2016, advancing from basic algorithms to complex methodologies tailored to address diverse challenges and use cases. However, research and benchmarking of…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-16 Arnab Mukherjee , Raju Halder , Joydeep Chandra

Our ISCA 2015 paper provides a new programmable processing-in-memory (PIM) architecture and system design that can accelerate key data-intensive applications, with a focus on graph processing workloads. Our major idea was to completely…

Hardware Architecture · Computer Science 2023-06-28 Junwhan Ahn , Sungpack Hong , Sungjoo Yoo , Onur Mutlu , Kiyoung Choi

Plasmodium of Physarum polycephalum is a single cell visible by unaided eye. During its foraging behavior the cell spans spatially distributed sources of nutrients with a protoplasmic network. Geometrical structure of the protoplasmic…

Pattern Formation and Solitons · Physics 2015-03-17 Andrew Adamatzky , Genaro J. Martinez , Sergio V. Chapa-Vergara , Rene Asomoza-Palacio , Christopher R. Stephens

In resent years, the software ecosystem for numerical simulation still remains fragmented, with different algorithms and discretization methods often implemented in isolation, each with distinct data structures and programming conventions.…

Numerical Analysis · Mathematics 2026-03-10 Yangyang Zheng , Huayi Wei , Yunqing Huang , Chunyu Chen , Tian Tian , Hanbin Liu , Wenbin Wang , Liang He

The popular Physarum-inspired Algorithms (PAs) have the potential to solve challenging network optimization problems. However, the existing researches on PAs are still immature and far from being fully recognized. A major reason is that…

Emerging Technologies · Computer Science 2019-04-09 Yahui Sun

A dynamic self-organized morphology is the hallmark of network-shaped organisms like slime moulds and fungi. Organisms continuously re-organize their flexible, undifferentiated body plans to forage for food. Among these organisms the slime…

Biological Physics · Physics 2019-03-27 Karen Alim