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We analyze the number of tile types $t$, bins $b$, and stages necessary to assemble $n \times n$ squares and scaled shapes in the staged tile assembly model. For $n \times n$ squares, we prove $\mathcal{O}(\frac{\log{n} - tb - t\log t}{b^2}…

Computational Geometry · Computer Science 2016-09-14 Cameron Chalk , Eric Martinez , Robert Schweller , Luis Vega , Andrew Winslow , Tim Wylie

We characterize the complexity of the PATS problem for patterns of fixed height and color count in variants of the model where seed glues are either chosen or fixed and identical (so-called non-uniform and uniform variants). We prove that…

Formal Languages and Automata Theory · Computer Science 2017-03-31 Shinnosuke Seki , Andrew Winslow

The field of complex self-assembly is moving toward the design of multi-particle structures consisting of thousands of distinct building blocks. To exploit the potential benefits of structures with such `addressable complexity,' we need to…

Soft Condensed Matter · Physics 2015-06-02 William M. Jacobs , Aleks Reinhardt , Daan Frenkel

The 2-Handed Assembly Model (2HAM) is a tile-based self-assembly model in which, typically beginning from single tiles, arbitrarily large aggregations of static tiles combine in pairs to form structures. The Signal-passing Tile Assembly…

Emerging Technologies · Computer Science 2013-12-16 Tyler Fochtman , Jacob Hendricks , Jennifer E. Padilla , Matthew J. Patitz , Trent A. Rogers

Autonomous assembly is a crucial capability for robots in many applications. For this task, several problems such as obstacle avoidance, motion planning, and actuator control have been extensively studied in robotics. However, when it comes…

Computer Vision and Pattern Recognition · Computer Science 2020-03-25 Yichen Li , Kaichun Mo , Lin Shao , Minhyuk Sung , Leonidas Guibas

In this paper, we extend existing results about simulation and intrinsic universality in a model of tile-based self-assembly. Namely, we work within the 2-Handed Assembly Model (2HAM), which is a model of self-assembly in which assemblies…

Computational Geometry · Computer Science 2015-03-17 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

Patterned self-assembly tile set synthesis PATS is the problem of finding a minimal tile set which uniquely self-assembles into a given pattern. Czeizler and Popa proved the NP-completeness of PATS and Seki showed that the PATS problem is…

Computational Complexity · Computer Science 2013-06-17 Lila Kari , Steffen Kopecki , Shinnosuke Seki

Traditionally, computation within self-assembly models is hard to conceal because the self-assembly process generates a crystalline assembly whose computational history is inherently part of the structure itself. With no way to remove…

Emerging Technologies · Computer Science 2020-08-18 Angel A. Cantu , Austin Luchsinger , Robert Schweller , Tim Wylie

Simulated annealing is an effective and general means of optimization. It is in fact inspired by metallurgy, where the temperature of a material determines its behavior in thermodynamics. Likewise, in simulated annealing, the actions that…

Machine Learning · Computer Science 2020-07-01 Avrim Blum , Chen Dan , Saeed Seddighin

In recent years, new methods have been developed to synthesize complex porous and micro-structured geometry in a variety of ways. In this work, we take these approaches one step further and present these methods as an efficacious design…

We review some recent results related to the self-assembly of infinite structures in the Tile Assembly Model. These results include impossibility results, as well as novel tile assembly systems in which shapes and patterns that represent…

Computational Complexity · Computer Science 2009-06-19 Matthew J. Patitz , Scott M. Summers

Shape formation is one of the most thoroughly studied problems in programmable matter and swarm robotics. However, in many models, the class of shapes that can be formed is highly restricted due to the particles' limited memory. In the…

Data Structures and Algorithms · Computer Science 2025-11-18 Jonas Friemel , David Liedtke , Christian Scheffer

We prove the unique assembly and unique shape verification problems, benchmark measures of self-assembly model power, are $\mathrm{coNP}^{\mathrm{NP}}$-hard and contained in $\mathrm{PSPACE}$ (and in $\mathrm{\Pi}^\mathrm{P}_{2s}$ for…

Computational Complexity · Computer Science 2017-03-16 Robert Schweller , Andrew Winslow , Tim Wylie

It is desirable to enable robots capable of automatic assembly. Structural understanding of object parts plays a crucial role in this task yet remains relatively unexplored. In this paper, we focus on the setting of furniture assembly from…

Robotics · Computer Science 2022-07-07 Rufeng Zhang , Tao Kong , Weihao Wang , Xuan Han , Mingyu You

Self-assembly is a fundamental process by which supramolecular species form spontaneously from their components. This process is ubiquitous throughout the life chemistry and is central to biological information processing. Algorithms for…

Emerging Technologies · Computer Science 2012-07-06 Abhishek Chhajer , Manish K. Gupta , Sandeep Vasani , Jaley Dholakiya

Both biological and artificial self-assembly processes can take place by a range of different schemes, from the successive addition of identical building blocks, to hierarchical sequences of intermediates, all the way to the fully…

Soft Condensed Matter · Physics 2015-08-12 Jim Madge , Mark A. Miller

A challenge of molecular self-assembly is to understand how to design particles that self-assemble into a desired structure and not any of a potentially large number of undesired structures. Here we use simulation to show that a strategy of…

Statistical Mechanics · Physics 2017-02-27 Stephen Whitelam

We consider non cooperative binding in so called `temperature 1', in deterministic (here called {\it confluent}) tile self-assembly systems (1-TAS) and prove the standing conjecture that such systems do not have universal computational…

Computational Complexity · Computer Science 2019-01-25 Jérôme Durand-Lose , Hendrik Jan Hoogeboom , Nataša Jonoska

At low temperatures ultrasoft particle systems develop interesting phases via the self-assembly of particle clusters. In this study we develop a general zero-temperature analysis fully characterizing the ground state of such models in two…

Soft Condensed Matter · Physics 2025-02-25 Matheus de Mello , Rogelio Díaz-Méndez , Alejandro Mendoza-Coto

We introduce staged self-assembly of Wang tiles, where tiles can be added dynamically in sequence and where intermediate constructions can be stored for later mixing. This model and its various constraints and performance measures are…

Computational Geometry · Computer Science 2008-03-04 Erik D. Demaine , Martin L. Demaine , Sandor P. Fekete , Mashhood Ishaque , Eynat Rafalin , Robert T. Schweller , Diane Souvaine