English

Signal Transmission Across Tile Assemblies: 3D Static Tiles Simulate Active Self-Assembly by 2D Signal-Passing Tiles

Emerging Technologies 2013-12-16 v2

Abstract

The 2-Handed Assembly Model (2HAM) is a tile-based self-assembly model in which, typically beginning from single tiles, arbitrarily large aggregations of static tiles combine in pairs to form structures. The Signal-passing Tile Assembly Model (STAM) is an extension of the 2HAM in which the tiles are dynamically changing components which are able to alter their binding domains as they bind together. For our first result, we demonstrate useful techniques and transformations for converting an arbitrarily complex STAM+^+ tile set into an STAM+^+ tile set where every tile has a constant, low amount of complexity, in terms of the number and types of ``signals'' they can send, with a trade off in scale factor. Using these simplifications, we prove that for each temperature τ>1\tau>1 there exists a 3D tile set in the 2HAM which is intrinsically universal for the class of all 2D STAM+^+ systems at temperature τ\tau (where the STAM+^+ does not make use of the STAM's power of glue deactivation and assembly breaking, as the tile components of the 2HAM are static and unable to change or break bonds). This means that there is a single tile set UU in the 3D 2HAM which can, for an arbitrarily complex STAM+^+ system SS, be configured with a single input configuration which causes UU to exactly simulate SS at a scale factor dependent upon SS. Furthermore, this simulation uses only two planes of the third dimension. This implies that there exists a 3D tile set at temperature 22 in the 2HAM which is intrinsically universal for the class of all 2D STAM+^+ systems at temperature 11. Moreover, we show that for each temperature τ>1\tau>1 there exists an STAM+^+ tile set which is intrinsically universal for the class of all 2D STAM+^+ systems at temperature τ\tau, including the case where τ=1\tau = 1.

Keywords

Cite

@article{arxiv.1306.5005,
  title  = {Signal Transmission Across Tile Assemblies: 3D Static Tiles Simulate Active Self-Assembly by 2D Signal-Passing Tiles},
  author = {Tyler Fochtman and Jacob Hendricks and Jennifer E. Padilla and Matthew J. Patitz and Trent A. Rogers},
  journal= {arXiv preprint arXiv:1306.5005},
  year   = {2013}
}

Comments

A condensed version of this paper will appear in a special issue of Natural Computing for papers from DNA 19. This full version contains proofs not seen in the published version