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We investigate reading strategies for node-link diagrams that wrap around the boundaries in a flattened torus topology by examining eye tracking data recorded in a previous controlled study. Prior work showed that torus drawing affords…

Human-Computer Interaction · Computer Science 2023-04-27 Kun-Ting Chen , Quynh Quang Ngo , Kuno Kurzhals , Kim Marriott , Tim Dwyer , Michael Sedlmair , Daniel Weiskopf

Previous network models have imagined that connections change to promote structural balance, or to reflect hierarchies. We propose a model where agents adjust their connections to appear credible to an external observer. In particular, we…

Social and Information Networks · Computer Science 2019-06-05 Joel Nishimura , Oscar Goodloe

A major ambition of systems science is to uncover the building blocks of any biological network to decipher how cellular function emerges from their interactions. Here, we introduce a graph representation of the information flow in these…

Molecular Networks · Quantitative Biology 2020-06-15 Flaviano Morone , Ian Leifer , Hernan A. Makse

Temporal graphs represent interactions between entities over the time. These interactions may be direct (a contact between two nodes at some time instant), or indirect, through sequences of contacts called temporal paths (journeys).…

Data Structures and Algorithms · Computer Science 2021-04-01 Luiz F. Afra Brito , Marcelo Albertini , Arnaud Casteigts , Bruno A. N. Travençolo

Understanding the structures why links are formed is an important and prominent research topic. In this paper, we therefore consider the link prediction problem in face-to-face contact networks, and analyze the predictability of new and…

Social and Information Networks · Computer Science 2014-07-09 Christoph Scholz , Martin Atzmueller , Gerd Stumme

To most mathematicians and computer scientists the word ``tree'' conjures up, in addition to the usual image, the image of a connected graph with no circuits. In the last few years various types of trees have been the subject of much…

Group Theory · Mathematics 2016-09-06 John W. Morgan

Neural networks are often represented as graphs of connections between neurons. However, despite their wide use, there is currently little understanding of the relationship between the graph structure of the neural network and its…

Machine Learning · Computer Science 2020-08-28 Jiaxuan You , Jure Leskovec , Kaiming He , Saining Xie

Many complex human and natural phenomena can usefully be represented as networks describing the relationships between individuals. While these relationships are typically intermittent, previous research has used network representations that…

Computers and Society · Computer Science 2013-06-06 Vassilis Kostakos , Eamonn O'Neill , Alan Penn

An ecological network is a formal representation of a specific type of interaction in a corresponding ecosystem. Such networks have traditionally been modelled as encoding exclusively pairwise interactions among the fundamental units of…

Algebraic Topology · Mathematics 2022-03-28 Udit Raj , Shashankaditya Upadhyay , Moumita Karmakar , Sudeepto Bhattacharya

Embedding learning transforms discrete data entities into continuous numerical representations, encoding features/properties of the entities. Despite the outstanding performance reported from different embedding learning algorithms, few…

Machine Learning · Computer Science 2023-08-04 Yan Zheng , Junpeng Wang , Chin-Chia Michael Yeh , Yujie Fan , Huiyuan Chen , Liang Wang , Wei Zhang

The connectivity of a network contains information about the relationships between nodes, which can denote interactions, associations, or dependencies. We show that this information can be analyzed by measuring the uncertainty (and…

Physics and Society · Physics 2020-01-23 Brennan Klein , Erik Hoel

Evolutionary relationships between species are usually represented in phylogenies, i.e. evolutionary trees, which are a type of networks. The terminal nodes of these trees represent species, which are made of individuals and populations…

Populations and Evolution · Quantitative Biology 2007-07-11 E. Hernandez-Garcia , E. A. Herrada , A. F. Rozenfeld , C. J. Tessone , V. M. Eguiluz , C. M. Duarte , S. Arnaud-Haond , E. Serrao

Many real world networks contain a statistically surprising number of certain subgraphs, called network motifs. In the prevalent approach to motif analysis, network motifs are detected by comparing subgraph frequencies in the original…

Social and Information Networks · Computer Science 2014-11-25 Anatol E. Wegner

This paper defines, analyzes, and discusses the emerging genre of visualization atlases. We currently witness an increase in web-based, data-driven initiatives that call themselves "atlases" while explaining complex, contemporary issues…

Human-Computer Interaction · Computer Science 2024-08-15 Jinrui Wang , Xinhuan Shu , Benjamin Bach , Uta Hinrichs

The visual world around us can be described as a structured set of objects and their associated relations. An image of a room may be conjured given only the description of the underlying objects and their associated relations. While there…

Computer Vision and Pattern Recognition · Computer Science 2021-11-18 Nan Liu , Shuang Li , Yilun Du , Joshua B. Tenenbaum , Antonio Torralba

This article explores the relationship between communities and short cycles in complex networks, based on the fact that nodes more densely connected amongst one another are more likely to be linked through short cycles. By identifying…

Disordered Systems and Neural Networks · Physics 2007-05-23 James Bagrow , Erik Bollt , Luciano da F. Costa

A tree view or tree navigator is used to display hierarchical data organized in the form of a tree. In a tree structure there are parent and child nodes. The child nodes may further have descendants to n levels. There are many methods to…

Human-Computer Interaction · Computer Science 2014-04-29 Umakant Mishra

This paper presents the foundational ideas for a new way of modeling social aggregation. Traditional approaches have been using network theory, and the theory of random networks. Under that paradigm, every social agent is represented by a…

Computational Engineering, Finance, and Science · Computer Science 2007-05-23 Mirco A. Mannucci , Lisa Sparks , Daniele C. Struppa

Temporality, a crucial characteristic in the formation of social relationships, was used to quantify the long-term time effects of networks for link prediction models, ignoring the heterogeneity of time effects on different time scales. In…

Social and Information Networks · Computer Science 2024-06-17 Yueran Duan , Mateusz Nurek , Qing Guan , Radosław Michalski , Petter Holme

The observed architecture of ecological and socio-economic networks differs significantly from that of random networks. From a network science standpoint, non-random structural patterns observed in real networks call for an explanation of…

Physics and Society · Physics 2019-05-30 Manuel Sebastian Mariani , Zhuo-Ming Ren , Jordi Bascompte , Claudio Juan Tessone